Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g02099 ATGGCCATCACCCTCCCTCTCGTCCAATCCAACAGCATCGTTGCGTCGAAGTCGCGCGAGGCTGCTGAGATCCTCGTGACGGTGCTGTTGCAGCTATTCACAAGCTACCAAAGTGGTGTTCCAAAATTCCACCAATTCTCCTCAGTTCCCGACCTCAAGCATCTCCTCAACAACGCCGCAAAGTTGAAGAGCCTTAAACACGCGACCCAAATCCACTCCCAACTCGTAACAACCAATAATCACGCGTCCCTCGCCAACATCAACACCCTCCTCCTCTTGTATGCAAAATGCGGCTCCATCCACCACACGCTCCTCTTGTTCAACACATACCCTCACCCCTCAACCAACGTCGTCACGTGGACCACACTCATAAACCAACTCTCCCGTTCCAACAAACCCTTCCAAGCCTTGACATTTTTCAACCGCATGAGAACCACTGGCATATACCCAAACCACTTCACCTTCTCAGCGATCTTACCCGCGTGCGCGCACGCAGCGCTCCTTTCAGAGGGCCAACAAATCCACGCATTGATACACAAACACTGCTTCCTAAATGACCCTTTTGTTGCCACCGCGTTGTTAGACATGTACGCTAAGTGTGGCTCCATGTTGTTGGCGGAGAACGTGTTCGACGAAATGCCCCATAGAAACCTCGTTTCATGGAACTCCATGATTGTCGGGTTTGTTAAGAACAAGTTGTACGGTCGTGCCATTGGGGTTTTCAGGGAGGTTCTTTCACTTGGCCCCGACCAAGTTAGTATCTCGAGCGTATTGAGTGCTTGTGCTGGATTGGTTGAGTTAGATTTTGGGAAACAAGTCCATGGGAGCATTGTTAAGCGTGGTTTGGTGGGGTTGGTTTATGTCAAGAACTCGCTGGTGGACATGTATTGCAAATGCGGGCTGTTTGAGGATGCAACCAAGTTGTTCTGTGGTGGTGGAGATAGAGATGTTGTAACGTGGAATGTAATGATCATGGGATGCTTTCATTGCCGAAATTTTGAACAAGCTTGCACCTATTTCCAAGCTATGATAAGGGAAGGCGTAGAACCCGACGAGGCTTCATACTCTTCTCTTTTTCATGCTTCTGCAATGCACGGGAGCATTGTTAAACGTGGTTTGGTGGGGTTGGTTTATGTCAAGAACTCGCTGGTGGACGTGTATTGCAAATGCGGGCTGTTTGAGGATGCAACCAAGTTGTTCTGTGGTGGTGGAGATAGAAATGTTGTAACGTGGAATGTAATGATCATGGGATGCTTTCATTGCCGAAATTTTGAACAAGCTTGCACCTATTTCCAAGCTATGATAAGGGAAGGCGTAGAACCCGACGGGGCTTCATACACTTCTCTTTTTCATGCTTCTGCAAGTATTGCAGCATTAACACAGGGGACCATGATCCATAGTCATGTTTTAAAAACCGGGCATGTGAAAGACTCTCATATTTCAAGTTCGTTGGTGACTATGTATGGGAAATGTGGAAGCATGTTAGACGCTTATCAAGTTTTTCGAGAAACTAAGGAACATTATGTGACCGAATCATTTTCAAGTCTTGAGAGTAGTGGGGCTAGCGTCAGGTTTCCGTGTTTGGGCTGTCAAAGGTGGTTCGACTTCGCAGTTAACATTGTATTTTTGTCGGATGGAACGACAACAGTAGTGGTGGTTAAGTTTTTTTAA 1671 0.4716 MAITLPLVQSNSIVASKSREAAEILVTVLLQLFTSYQSGVPKFHQFSSVPDLKHLLNNAAKLKSLKHATQIHSQLVTTNNHASLANINTLLLLYAKCGSIHHTLLLFNTYPHPSTNVVTWTTLINQLSRSNKPFQALTFFNRMRTTGIYPNHFTFSAILPACAHAALLSEGQQIHALIHKHCFLNDPFVATALLDMYAKCGSMLLAENVFDEMPHRNLVSWNSMIVGFVKNKLYGRAIGVFREVLSLGPDQVSISSVLSACAGLVELDFGKQVHGSIVKRGLVGLVYVKNSLVDMYCKCGLFEDATKLFCGGGDRDVVTWNVMIMGCFHCRNFEQACTYFQAMIREGVEPDEASYSSLFHASAMHGSIVKRGLVGLVYVKNSLVDVYCKCGLFEDATKLFCGGGDRNVVTWNVMIMGCFHCRNFEQACTYFQAMIREGVEPDGASYTSLFHASASIAALTQGTMIHSHVLKTGHVKDSHISSSLVTMYGKCGSMLDAYQVFRETKEHYVTESFSSLESSGASVRFPCLGCQRWFDFAVNIVFLSDGTTTVVVVKFF 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g02099 556 Pfam PPR repeat family 406 452 IPR002885 -
Gma03g02099 556 Pfam PPR repeat family 116 163 IPR002885 -
Gma03g02099 556 Pfam PPR repeat family 315 361 IPR002885 -
Gma03g02099 556 PANTHER OS07G0578800 PROTEIN-RELATED 364 509 IPR045215 GO:0003723|GO:0009451
Gma03g02099 556 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 364 509 - -
Gma03g02099 556 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 39 363 - -
Gma03g02099 556 Gene3D Tetratricopeptide repeat domain 126 266 IPR011990 GO:0005515
Gma03g02099 556 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 186 220 IPR002885 -
Gma03g02099 556 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 116 150 IPR002885 -
Gma03g02099 556 PANTHER OS07G0578800 PROTEIN-RELATED 39 363 IPR045215 GO:0003723|GO:0009451
Gma03g02099 556 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 316 350 IPR002885 -
Gma03g02099 556 TIGRFAM PPR: pentatricopeptide repeat domain 318 352 IPR002885 -
Gma03g02099 556 TIGRFAM PPR: pentatricopeptide repeat domain 219 246 IPR002885 -
Gma03g02099 556 TIGRFAM PPR: pentatricopeptide repeat domain 118 151 IPR002885 -
Gma03g02099 556 TIGRFAM PPR: pentatricopeptide repeat domain 409 442 IPR002885 -
Gma03g02099 556 Gene3D Tetratricopeptide repeat domain 372 464 IPR011990 GO:0005515
Gma03g02099 556 Gene3D Tetratricopeptide repeat domain 267 371 IPR011990 GO:0005515
Gma03g02099 556 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 407 441 IPR002885 -
Gma03g02099 556 Pfam PPR repeat 191 217 IPR002885 -
Gma03g02099 556 Pfam PPR repeat 482 507 IPR002885 -
Gma03g02099 556 Pfam PPR repeat 381 401 IPR002885 -
Gma03g02099 556 Pfam PPR repeat 219 248 IPR002885 -
Gma03g02099 556 Pfam PPR repeat 290 310 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g02099 Gma-Chr3 46532717 46539254 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g02099 136 506 Glycoside Hydrolase AT3G49170 30.711 2.49e-42 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g02099 - - gmx:100808394 713.761