Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g02062 ATGCGTTGCGTGAATAGATTGTTGTTGCGGACGCCATGTTCCCGCCCCCGCAACATGTGTACGGTTACATCAGCAAAGCTTAATTTCATGATCAACGCTTGCATACAAGACAACAACATAAACAATGCTCGCAAACTGTTTGACGAAAACCCCTCGTCCCGCAACCTCGTATCCTGGAACATGATGATGACCGGTTACGTTAAACACCATCAAATTGAATATGCCCAGCACCTGTTCGATCAAATGTCCTTCAAAGACACGGTTTCCTGGAATATCATGCTCTCTGGTTTTCACAGAATCACAAACTCTGATGGGTTGTATCATTGTTTCTTGCAGATGGAAGAGCTGGTGTGGCCCCCGATGACTATACCGTCTCCACGAGCTTATGCCAGCTTAAGAGACGAGGAGGCTTTTAAGCGAGCGTTTGATGATATATTGGCGAAAGATGTCACGTCTTGGAATGCTTTGGTTTCTGGTTATATGGAAGTGGGAAGTATGGATGATGCTCAAACAACCTTTGATATGATGCCTGAGAGAAACATAATTTCCTGGACTACTTTGGTGAATGGTTATATCAGGAACAAGAGGATAAACAAAGCAAGGTCTGTTTTTAACAAAATGAGTGAGAGGAATGTGGTGTCTTGGACGGCAATGATTAGTGGGTATGTGCAAAATAAGAGATTTACGGATGCGCTGAAGCTTTTTCTTCTGATGTTTAATTCGGGAACTCGTCCCAATCATTTCACATTTTCAAGTGTGTTAGATGCATGTGCTGGTTATTCCTCTCTTTTGATGGGAATGCAGGTGCACCTGTATTTTATCAAGTCTGGCATACCAGAGGATGTCATCTCATTAACCTCGCTTGTGGATATGTATGCAAAATGTGGGGATATGGATGCAGCATTTTGTGTTTTTGAGTCCATTCCGAATAAGAATTTGGTGTCATGGAATTCAATATTTGGTGGCTGTGCAAGGCACGGGCTAGCTACCCGAGTGCTGGAGGAGTTTGATAGGATGAAAAAAGCAGGTGTTATACCAGATGAAGTTACTTTTGTAAATGTGTTGTCAGCGTGTGTGCATGCTGGTCTTGTTGAAGAAGGTGAAAAGCACTTTACTTCTATGTTGACCAAGTATGGAATCCAAGCAGAGATGGAGCACTATACTTGCATGGTGGACCTCTATGGAAGAGCAGGGCGATTTGATGAAGCTTTAAAATCAATCAGGAATATGCCATTTGAGCCTGCGTGGTGTTGTGGGGTGCGTTGCTTGCAGCTTGTGACCTGCATTCAAATTTAG 1296 0.4329 MRCVNRLLLRTPCSRPRNMCTVTSAKLNFMINACIQDNNINNARKLFDENPSSRNLVSWNMMMTGYVKHHQIEYAQHLFDQMSFKDTVSWNIMLSGFHRITNSDGLYHCFLQMEELVWPPMTIPSPRAYASLRDEEAFKRAFDDILAKDVTSWNALVSGYMEVGSMDDAQTTFDMMPERNIISWTTLVNGYIRNKRINKARSVFNKMSERNVVSWTAMISGYVQNKRFTDALKLFLLMFNSGTRPNHFTFSSVLDACAGYSSLLMGMQVHLYFIKSGIPEDVISLTSLVDMYAKCGDMDAAFCVFESIPNKNLVSWNSIFGGCARHGLATRVLEEFDRMKKAGVIPDEVTFVNVLSACVHAGLVEEGEKHFTSMLTKYGIQAEMEHYTCMVDLYGRAGRFDEALKSIRNMPFEPAWCCGVRCLQLVTCIQI 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g02062 431 Gene3D Tetratricopeptide repeat domain 218 331 IPR011990 GO:0005515
Gma03g02062 431 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 312 346 IPR002885 -
Gma03g02062 431 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 149 183 IPR002885 -
Gma03g02062 431 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 55 89 IPR002885 -
Gma03g02062 431 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 127 417 - -
Gma03g02062 431 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 18 120 - -
Gma03g02062 431 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 18 120 - -
Gma03g02062 431 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 127 417 - -
Gma03g02062 431 Pfam PPR repeat 386 410 IPR002885 -
Gma03g02062 431 Pfam PPR repeat 57 82 IPR002885 -
Gma03g02062 431 Pfam PPR repeat 28 49 IPR002885 -
Gma03g02062 431 Pfam PPR repeat 152 181 IPR002885 -
Gma03g02062 431 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 211 245 IPR002885 -
Gma03g02062 431 TIGRFAM PPR: pentatricopeptide repeat domain 57 84 IPR002885 -
Gma03g02062 431 TIGRFAM PPR: pentatricopeptide repeat domain 152 181 IPR002885 -
Gma03g02062 431 TIGRFAM PPR: pentatricopeptide repeat domain 314 348 IPR002885 -
Gma03g02062 431 TIGRFAM PPR: pentatricopeptide repeat domain 387 405 IPR002885 -
Gma03g02062 431 TIGRFAM PPR: pentatricopeptide repeat domain 182 213 IPR002885 -
Gma03g02062 431 TIGRFAM PPR: pentatricopeptide repeat domain 213 246 IPR002885 -
Gma03g02062 431 Gene3D Tetratricopeptide repeat domain 332 417 IPR011990 GO:0005515
Gma03g02062 431 Pfam PPR repeat family 311 359 IPR002885 -
Gma03g02062 431 Pfam PPR repeat family 210 258 IPR002885 -
Gma03g02062 431 Gene3D Tetratricopeptide repeat domain 16 124 IPR011990 GO:0005515
Gma03g02062 431 Gene3D Tetratricopeptide repeat domain 125 212 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g02062 Gma-Chr3 46165000 46166410 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g02062 30 413 Glycoside Hydrolase AT3G49170 32.208 7.36e-58 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g02062 - - gmx:102665683 731.865
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g02099 19 49847260 49848855 Gma03g02062 03 46165000 46166410 GST