Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01958 ATGGCTGTGGTTGCAGTGCAGCAATTCCTATGCTTCACAGAATTAAATTGGAGAAATATAACAAGGCCATGCATTCCCCCTCACAGTTCAATTCTCCTACGTTCACGCAAAAAGATTCAATATTCTCTGATTTCATGCTCTTCATCACAGACCCCAGAAGCTGATACTCAAACTGCTGAATCTTGCGTCAATTTGGGCCTTGAGCTCTTCTCCAAGGGACGGGTTAAAGATGCTTTGGCCCAGTTTGAAGCAGCACTTTCCTTGAACCCTAATCCGGTGGAGGCCCAAGCTGCGTACTACAACAAAGCTTGCTGCCATGCATACAGGGGAGAAGGAAAGAAAGCAGCCGATTGTCTCCGCACTGCTTTGAGGGAATACGATCTAAAATTTGGTACAATTCTCAATGATCCTGACTTGGCCTCTTTCAGAGCTTTGCCTGAATTCAAAGAACTACAAGAAGAGGCTAGGCTGGGTGGGGAAGATATCGGCTACAGTTTTCGGCGAGATCTAAAACTTATTAGTGAAGTCCAAGCACCATTTCGTGGGGTTAGGAGATTCTTTTATGTAGCATTTACAGCAGCCGCAGGAATATCATTGTTTTTTACTTTGCCCAGGCTATTACGTGCAATTAATGGTGGTGATGGTGCTCCTGATCTCTTGGCAACTGCTGGGAATGCTGCCATTAATATTGGAGGTATTGTTGTTCTTGTGGCATTATTCTTTTGGGACAATAAAAAAGAGGAGGAACAACTTGCACAAATATCTCGAGATGAGACACTATCAAGGTTGCCTTTGTGCCTTTCAACTAATCGTGTAGTTGAACTTGTGCAGCTACGAGATACAGTTCGACCAGTTATATTAGCAGGAAAAAAGGAAACAGTTTCTTTGGCTATGCAAAGAGCAGAGAGATTTCGAACTGAGCTCCTTAGGCGTGGTGTTCTGTTAGTTCCTGTTATCTGGGGAGAAGGTCAGGAAACAAAACTTGAGAAAAAAGGGTTTGGCCTAAAGCCAAAGGCAGCTGAAGCTCTTTCTTCTATTGGGGAAGATTTTGAGAAGAGAGCGCAGTCCATAACTGCAAAATCGAAGTTGAAATCTGAAATTAGGTTCAAGGCTGAGGTTGTATCACCAGTGGAATGGGAACGGTGGATAAGAGATCAGCAGAAGTCTGAAGGAGTTTCACTTGGTGAAGATGTGTACATAATACTTCGCCTAGATGGACGGGTTCGAAGATCAGGGAAGGGTATGCCTGATTGGCAGCAAATTGTGAAGGAGCTACCACCAATGGAGGCATTTTTAAGCAAGATAGAAAGATGA 1314 0.4384 MAVVAVQQFLCFTELNWRNITRPCIPPHSSILLRSRKKIQYSLISCSSSQTPEADTQTAESCVNLGLELFSKGRVKDALAQFEAALSLNPNPVEAQAAYYNKACCHAYRGEGKKAADCLRTALREYDLKFGTILNDPDLASFRALPEFKELQEEARLGGEDIGYSFRRDLKLISEVQAPFRGVRRFFYVAFTAAAGISLFFTLPRLLRAINGGDGAPDLLATAGNAAINIGGIVVLVALFFWDNKKEEEQLAQISRDETLSRLPLCLSTNRVVELVQLRDTVRPVILAGKKETVSLAMQRAERFRTELLRRGVLLVPVIWGEGQETKLEKKGFGLKPKAAEALSSIGEDFEKRAQSITAKSKLKSEIRFKAEVVSPVEWERWIRDQQKSEGVSLGEDVYIILRLDGRVRRSGKGMPDWQQIVKELPPMEAFLSKIER 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01958 437 Pfam Low psii accumulation1 / Rep27 167 244 IPR021883 -
Gma03g01958 437 PANTHER PROTEIN LOW PSII ACCUMULATION 1, CHLOROPLASTIC 41 437 - -
Gma03g01958 437 SUPERFAMILY TPR-like 53 125 IPR011990 GO:0005515
Gma03g01958 437 SMART tpr_5 96 129 IPR019734 GO:0005515
Gma03g01958 437 SMART tpr_5 59 92 IPR019734 GO:0005515
Gma03g01958 437 PANTHER PROTEIN LOW PSII ACCUMULATION 1, CHLOROPLASTIC 41 437 - -
Gma03g01958 437 ProSiteProfiles TPR repeat profile. 59 92 IPR019734 GO:0005515
Gma03g01958 437 Gene3D Tetratricopeptide repeat domain 46 144 IPR011990 GO:0005515
Gma03g01958 437 Pfam Tetratricopeptide repeat 59 91 IPR013105 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01958 Gma-Chr3 45353883 45357879 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01958 - - gmx:100784188 850.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g01958 03 45353883 45357879 Gma03g01958 03 45353883 45357879 ECH
Gma19g01994 19 48969782 48973850 Gma03g01958 03 45353883 45357879 GST