Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01913 ATGATGCTCAGAATTCGTAGCCGCGACGGCCTGGAGCGAGTGAGCGTCGAAAACCCCCACAGCACAACAGTGTCATACCTAAAACGGATCATCGAAACCCAATTGGGAATCCCTGTTCACAACCAAACCCTGTCCACAAACCAGAACCTCCTCTTGGCAAAATCCCTAGAAGATCTCCACCGATTCACCGACATGTCCAACCCCGACGCGCCTCTCTCGTCTCTCAACCTCGGCCACGGCTCCATGGTCTTCCTGGCCTACGAGGGTGAGCGCCGCGTGGCCGGCCCCGCCTTCAACCCCGCCGGCTCCTTCGGCCGCAAGATGACCATGGATGACCTCATCGCCAAGCAGATGCGCGTCACGCGCCAGGAGAATCCGCACTGCGAGCTCGTCTCCTTTGACCGCGACTGCGCCAACGCCTTCCAGCACTACGTCAACGACACTCTCGCCTTCGCCGTCAAGCGCGGCGGCTTCATGTATGGCACCGTCTCGGAGGAGGGAAAGGTCGAGGTGGACTTCATCTACGAGCCTCCTCAGCAGGGTTCGGAGGACAATCTCGTCTTTTTCAGGGATACCGAAGAGGAAAAGTTTGTTGAGGCTATTGCGGTGGGGTTGGGGATGACGAAGGTTGGGTTTATTTTCACGCAGACGATAACTCAGGATAAGAAGGATTACACTTTGTCGAACAGGGAGGTGCTTCAGGCTGTGGAGTACCATGCGGAGAGTGGGTTGAAGGAGTGGGTTACTGCTGTGGTTAAGCTTGAGGCGAATGAGGAAATGGGTGGTGCAGATGTGCATTTTGAAGCGTTTCAAATGAGTGATGTGTGTGTGAGGTTGTTTAAGGAAGGGTGGTTCGAGACGGAGATCAAGGAGGACGATGATCCCAAGTTGTCTAAGATGAAGAAGGATGTGGTTGTTGGGGTTAAGGATACTAGAGAGGTTGACAATGATTTCTTCTTGGTCGTTGTCAAAATCGCTGATCATCAGGGTCCTCTTTCATCATCGTTTCCCATTGAGAACCGGAACACTCAAGTGCCTATGAAGGCTTTGAAGAATCATCTGGACCGGACAAAAAATCTTCCATTTGTGAAGCGAATTTCTGATTTTCATCTTCTCCTTGTATTAGCGAGGGTTTTAGACCTGAATGCTGATGTTCCTGCATTGACGGAATGTGTGCAGACACAGACTTCTGTTCCAGAAGGTTACCAGATCCTTATCGAGTCTATGGCAAGCACTGCTTGA 1242 0.5201 MMLRIRSRDGLERVSVENPHSTTVSYLKRIIETQLGIPVHNQTLSTNQNLLLAKSLEDLHRFTDMSNPDAPLSSLNLGHGSMVFLAYEGERRVAGPAFNPAGSFGRKMTMDDLIAKQMRVTRQENPHCELVSFDRDCANAFQHYVNDTLAFAVKRGGFMYGTVSEEGKVEVDFIYEPPQQGSEDNLVFFRDTEEEKFVEAIAVGLGMTKVGFIFTQTITQDKKDYTLSNREVLQAVEYHAESGLKEWVTAVVKLEANEEMGGADVHFEAFQMSDVCVRLFKEGWFETEIKEDDDPKLSKMKKDVVVGVKDTREVDNDFFLVVVKIADHQGPLSSSFPIENRNTQVPMKALKNHLDRTKNLPFVKRISDFHLLLVLARVLDLNADVPALTECVQTQTSVPEGYQILIESMASTA 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01913 413 ProSiteProfiles Ubiquitin domain profile. 1 85 IPR000626 GO:0005515
Gma03g01913 413 ProSiteProfiles MPN domain profile. 130 276 IPR037518 -
Gma03g01913 413 Pfam NPL4 family 157 229 IPR007717 -
Gma03g01913 413 SUPERFAMILY Ubiquitin-like 1 89 IPR029071 -
Gma03g01913 413 CDD Ubl_AtNPL4_like 1 85 - -
Gma03g01913 413 CDD MPN_NPL4 119 375 IPR007717 -
Gma03g01913 413 PANTHER NUCLEAR PROTEIN LOCALIZATION 4 102 411 IPR016563 GO:0006511
Gma03g01913 413 PANTHER NUCLEAR PROTEIN LOCALIZATION 4 2 93 IPR016563 GO:0006511
Gma03g01913 413 Gene3D - 1 101 - -
Gma03g01913 413 Pfam Nuclear pore localisation protein NPL4 1 85 IPR024682 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01913 Gma-Chr3 45015347 45017679 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01913 K14015 - gmx:100811623 801.201
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g01913 03 45015347 45017679 Gma03g01913 03 45015347 45017679 ECH
Gma19g01951 19 48641586 48645909 Gma03g01913 03 45015347 45017679 GST