Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01873 ATGACCCGTTTATCCGAGAGGCTGGTCCGTTTGTTTCCGAAACCGACCCGTTTTCTCGCTCTTGTTTCTCTCTCCACTCTCCATCATCTCTGCAAGTCCCTCGCTCGCTTCCTACTCTCACAAACCCTACCCGCCACCATGGACAATAACAACCTCTTCTCCGATTACTTCTCCGACGACCTCGATTCCTCCCCCTACCGTCCCCACCGCCGCGACCACGACCACGACCACTACCGCGATTTCGCCGCCCTCGAGCGCCTCTACCTCCTCCCCTACACCTGGTGGCTCGAAGAAGCGCAAAAAAATGAAGAAGCTGATCATCGAGGAGAGGCCGTGCTTTATACGGTGTCGTGCAATTCCGATTCCGAAGCCGAGATTTTGCTTCATCTCAGGAAGGAAGAGGACCCACACAACAACAACATTGGGGTTTCTGCGCGTCAGTATGCCTTGGTTCCCGAGGGACTTTGGTTGCGTGCTCTCAAACGGCATAATGATTTTAATAATGCAGTGAAAGATTTTGGAAGCATCCCATATGAAGAGGACTGTTTGCCAGATTTGTTCCCCTTGCAAGTTAAGATATTTGTTTCATGGGAAACCAGTTTACTGGTAGCAAAGATAAGCCAAAAGGAAAATGTGGCTGCCTTCTATGAGAAAGCTTGTGACATTTTCAATTCTGCATATAACCCTGTGCATATTTGGGACTTTTCCGGGCAGACAACCCAGTTCTTCTTGAATGACAAATCTAGGTTGCCAAACGATTCTCCTGGTCAACCTAGAAAAGAGGTTGTTCTGGAGTTACAAGTTCATGGACTTCCAGATTCTATGGGGGGTAATGGGCGCAATGAGATGATTTTAGATAGGTCTCAGATGGAATGTTCACATAGTGGCTCTGTTATAGTGAATGGAAGCACTGACAATGTGATCCCCTGCGTATCAGTGACCAACCATTTTCGAGGCAGTAGCTGTAGAGCAATTCGATCTTTGGGCTTGACAGGACTACAGAATCTTGGAAATACATGTTTTATGAATAGTGCCATTCAGTGTTTGGCTCACACCCCAAAGCTTGTTGATTTTTTCCTTGGAGATTATCGTAAAGAGATAAATTATGAAAATCCGTTGGGAATGAATGGAGAACTTGCTCTAGCTTTTGGAGACTTGCTTAGAAAGCTGTGGGTTCCTGGAGCAGCACCCATTGCACCAAGAACGTTTAAGATGAAACTAGCTAATTTTGCTCCTCAGTTTAGTGGTTATAGCCAGCATGACTCTCAAGAACTTCTTGCTTTTTTGTTGGATGGATTGCATGAAGACCTTAATCGTGTAAAACGCAAACCATATCATGAAGTTAAGGATGCAGATGGTCGTCCAGATGAAGAAGTGGCAGAAGAGTATTGGCGAAATCACCTTGCTCGCAATGACTCCATTGTAGTTGATTTATGCCAAGGTCAGTTTCGGTCGACATTGGTTTGCCCTATTTGCAAGAAGGTTTCGATCACATTTGACCCTTTTATGTATCTATCTCTTCCTTTACCTTCTACTACGATACGGACCATGACTTTGACAGTCATAAGCACTGATGGGAATACATCACCTTCCGCAATTACAGTAACAGTGCTTGAAAGTGGAACACTTAAGGATCTTATTGGGGCCTTAAGTGCTTCTTGTTCTCTGAGAGATGATGAAACCCTCTTGGTGGCTGAGATATACAGGAATAAAATTTTTCGAGTATTTGAGGATCCATCTGATTTGTTAGTTGAAATTAGAGATCAGGACAAACTTGTCGCTTACCGAATGCAGAAGTGTAATGAGCCTAGTCCCTTGGTTGTTTTTCTGCATGAACATTTGGCGGAAAATTTTGGGAAGGAGAGGTTAGAAAACAGGTTGTTTGGTATTCCCCTTGTTACAAGGTGGTCCAGTATTTCCTGTGGATATGATGATGTTGAAAGGGAGTTTCTGAAGTTAATCAATCCATTTCTGATGCGCACTGAAGGTGTATTAGATGAGTATGATAAGAATGATGGTGTTAAAAAAAGAGTAAGTGAACATGATGAATTGGGTGATGCTACTAACTCTGCAGCAATAGTAAATGATGCAGACTCAAACAGTGGAACAGAGGATGACATTCATTCTTCAACTGACTTTGAATTCTACTTGCAAGGATTAGAGAGGGCCAAGATAATAGTGAACAAACCATTACCACAAGTCACAATGTCGTCTGGAAGGCTGCCTGCGGTAGTTGTCTTGTGGTCAGATAAGATGCTTAAAATGTATGATACATACCTGCTTGATTCATTGCCTGAGGTTTTCAAGCCCCAGCTATTTGCCAAGAGAATGCAAGAATCAGTTTCTATTTACAAGTGCCTTGAAGCTTTCTTGAAAGAGGAACCTCTTGGGCCAGAAGACATGTGGTACTGTCCTAACTGCAAAAATCCTCAGCAAGCATCTAAGAAACTAGATCTTTGGAGATTGCCTGAAATTCTTGTTGTTCATTTGAAGAGGTTCTCATTCAGCCGATACTTCAAGAACAAGCTGGAAACATTTGTTGATTTCCCAATTAATGATCTGGACTTGTCAACATATGTAGCCCACGGGAATAACCAGTCTTCCAACCGCTATGTGCTATATGCAATTAGTTGTCATTATGGAGGGTTAGGAGGAGGTCACTATACAGCATTTGTCCGTTATGGCTATGATAAATGGTATGATTTTGATGACAGCAGGGTCGAATCTATTAGTGAGGACATGATAAAGACTCCTGCTGCTTATGTTCTTTTCTACAGGAAAATTTAG 2787 0.4306 MTRLSERLVRLFPKPTRFLALVSLSTLHHLCKSLARFLLSQTLPATMDNNNLFSDYFSDDLDSSPYRPHRRDHDHDHYRDFAALERLYLLPYTWWLEEAQKNEEADHRGEAVLYTVSCNSDSEAEILLHLRKEEDPHNNNIGVSARQYALVPEGLWLRALKRHNDFNNAVKDFGSIPYEEDCLPDLFPLQVKIFVSWETSLLVAKISQKENVAAFYEKACDIFNSAYNPVHIWDFSGQTTQFFLNDKSRLPNDSPGQPRKEVVLELQVHGLPDSMGGNGRNEMILDRSQMECSHSGSVIVNGSTDNVIPCVSVTNHFRGSSCRAIRSLGLTGLQNLGNTCFMNSAIQCLAHTPKLVDFFLGDYRKEINYENPLGMNGELALAFGDLLRKLWVPGAAPIAPRTFKMKLANFAPQFSGYSQHDSQELLAFLLDGLHEDLNRVKRKPYHEVKDADGRPDEEVAEEYWRNHLARNDSIVVDLCQGQFRSTLVCPICKKVSITFDPFMYLSLPLPSTTIRTMTLTVISTDGNTSPSAITVTVLESGTLKDLIGALSASCSLRDDETLLVAEIYRNKIFRVFEDPSDLLVEIRDQDKLVAYRMQKCNEPSPLVVFLHEHLAENFGKERLENRLFGIPLVTRWSSISCGYDDVEREFLKLINPFLMRTEGVLDEYDKNDGVKKRVSEHDELGDATNSAAIVNDADSNSGTEDDIHSSTDFEFYLQGLERAKIIVNKPLPQVTMSSGRLPAVVVLWSDKMLKMYDTYLLDSLPEVFKPQLFAKRMQESVSIYKCLEAFLKEEPLGPEDMWYCPNCKNPQQASKKLDLWRLPEILVVHLKRFSFSRYFKNKLETFVDFPINDLDLSTYVAHGNNQSSNRYVLYAISCHYGGLGGGHYTAFVRYGYDKWYDFDDSRVESISEDMIKTPAAYVLFYRKI 928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01873 928 Pfam Ubiquitin carboxyl-terminal hydrolase 331 925 IPR001394 GO:0004843|GO:0016579
Gma03g01873 928 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 871 888 IPR018200 GO:0004843|GO:0006511
Gma03g01873 928 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 331 928 IPR028889 -
Gma03g01873 928 SUPERFAMILY Cysteine proteinases 329 927 IPR038765 -
Gma03g01873 928 CDD Peptidase_C19R 755 926 - -
Gma03g01873 928 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 332 347 IPR018200 GO:0004843|GO:0006511
Gma03g01873 928 Gene3D Cysteine proteinases 749 928 - -
Gma03g01873 928 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 48 928 - -
Gma03g01873 928 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 48 928 - -
Gma03g01873 928 Gene3D Cysteine proteinases 319 561 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01873 Gma-Chr3 44698734 44705580 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01873 772 928 Miscellaneous Gene Families AT4G31670 33.750 1.84e-19 91.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01873 - K21343 gmx:100813405 1858.19