Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01737 ATGGAGAGTGCAAATTGCTGTTACAGTAGAGGATATGGCATTATGGATAGATGGCAATGGCAATGGCAGGTAGGCCTCCACTGCAAATCCTTCTTCAACTCTTCCCTTTCTCCTCCATACTCCAAACCACCGTCCTCCCTCTCTCTCCGCCACAAACTCCGCCATGGCACCCACTACCTTCCCCCGGAGTCCCACTCCCTCCTCCACGCCCTCCACGTGTCCTCCCGCTCCGGCGACACCCACCTGGCCAAGACCGTCCACGCCACGCTCCTCAAACGCGACGAAGAAGACACCCATCTCTCCAACGCCCTCATCTCCACTTACCTCAAACTCAACCTCTTCCCCCACGCCCTCCGCCTCTTCCTCTCCCTCCCTTcCCCCAACGTCGTCTCCTACACCACCCTCATCTCCTTCCTCTCCAAGCACCGCCAGCACCACGCGCTCCATCTCTTCCTCCGCATGACCACTCGCTCCCACCTCCCCCCCAACGAGTACACCTACGTCGCCGTTTTAACCGCCTGCTCTTCACTCCTCCACCACTTCCATTTCGGCCTCCAGCTCCACGCCGCCGCACTCAAAACTGCTCACTTCGACTCCCCCTTCGTCGCCAACGCCCTCGTCTCTCTCTACGCCAAGCACGCCTCTTTCCACGCCGCGCTTAAACTCTTCAACCAAATACCACGCAGGGACATTGCTTCGTGGAACACCATCATCTCTGCTGCGCTTCAGGACTCCTTATACGACACCGCGTTTCGCTTGTTCCGTAACATGCAGGCCACGGACGCGTTTAGAGTCGATGACTTCACTTTATCCATACTTCTCACCGCGTCTGCGTCGTTGATGGAAGGTCAACAGGTTCACGCCCACGCTGTTAAGTTAGGGTTGGAAACCGATTTGAACGTTGGGAATGGACTCATTGGGTTTTACTCTAAATTTGGTAATGTTGATGACGTGGAGTGGTTGTTTGAGGGGATGAGAGTCAGGGATGTTATAACTTGGACTGAGATGGTCACAGCGTATATGGAGTTTGGGTTGGTCAATTTGGCCTTGAAGGTGTTCGATGAAATGCCAGAGAAGAATTCCGTGTCTTATAACACGGTTCTGGCTGGGTTCTGTCGAAACGAACAAGGTTTTGAGGCCATGAGGTTGTTTGTAAGAATGGTGGAGGAGGGTTTGGAGTTGACGGATTTTAGTTTGACTAGTGTTGTTGATGCTTGTGGATTGCTTGGTGATTACAAGGTCAGCAAGCAGGTTCATGGGTTTGCGGTGAAGTTTGGGTTTGGATCGAATGGTTATGTTGAGGCTGCATTGCTTGACATGTACACGAGGTGTGGGAGGATGGTGGATGCCGGTAAGATGTTTTTGAGATGGGAGTTGGAGGAGTTTAGCTCTGTGGTTTGGACGGCAATGATATGTGGCTATGCTCGGAATGGACAACCGGAGGAGGCGATTTATCTTTTCCACGTTGGTCGATCAGATGGCAAGGTGATTATGGATGAAGTTGCAGCGGCTTCAATGCTTGGTCTTTGTGGAACTATTGGTCATCTTGATATGGGTAAGCAAATCCATTGCCATGTGATTAAATGTGGATTGGGATTTAATTTGGAAGTCGGAAATGCAGTTGTTAGCATGTATTTTAAGTGTGGGAGTGTGGATGATGCAATGAAGGTTTTCGGTGATATGCCTTGTACTGATATAGTTACATGGAATACTTTGATTTCTGGCAATCTTATGCACAGACAGGGTGATAGAGCATTGGAAATATGGGTGGAGATGCTGGGGGAGGGCATAAAGCCTAACCAAGTTACATTTGTTTTGATCATTTCAGCTTACAGGCAAACTAACTTAAATTTGGTTGATGATTGCCGTAATTTGTTTAATTCAATGAGAACGGTTTATCAAATTGAGCCCACATCCAGGCATTATGCTTCCTTCATCAGTGTTTTGGGTCACTGGGGTCTTCTGCAAGAAGCACTAGAAACTATCAATAACATGCCTTTCCAGCCTTCTGCTCTTGTTTGGCGCGTTTTGCTTGATGGTTGTAGATTGCATAAGAATGAATTGATTGGAAAATGGGCTGCTCAGAATATTCTGGCCCTTGAACCTAAAGATCCTTCAACATTTATACTTGTTTCAAATTTGTATTCTGCTTCTGGGAGATGGGACCGCTCTGAAATGGTCAGGGAGGATATGAGAGAAAAGGGGTTTCGCAAACACCCAGCTCAAAGTTGGATCGTTTGTGAGAAGAAAATAAATTCATTTTATCCGAGAGATAGATCACATCCACAGGAGAAAGACATACAGAGAGGATTGGAGAGCAAAGTTGATGTGGGATCTGCCATCACATATATGTATGCAAAATGTGGAAGACTGGATATTGCTTACGAATTCTTCAGAGGAATGTTCGAAAAAGATAGTGTTTGTTGGAACTCAATGATTTCAAGCTTCTCACGTAACGGGAAACCAGAAATGGCCATTGATCTTTTTCGTCAAATGGGAACGATTGGAGCCAAGTTTGATTCTGTGACCAGAAATAGCATCTGCTCTCTCTGCTGCTGCAAATTTAACAGCACTATATTATGA 2583 0.475 MESANCCYSRGYGIMDRWQWQWQVGLHCKSFFNSSLSPPYSKPPSSLSLRHKLRHGTHYLPPESHSLLHALHVSSRSGDTHLAKTVHATLLKRDEEDTHLSNALISTYLKLNLFPHALRLFLSLPSPNVVSYTTLISFLSKHRQHHALHLFLRMTTRSHLPPNEYTYVAVLTACSSLLHHFHFGLQLHAAALKTAHFDSPFVANALVSLYAKHASFHAALKLFNQIPRRDIASWNTIISAALQDSLYDTAFRLFRNMQATDAFRVDDFTLSILLTASASLMEGQQVHAHAVKLGLETDLNVGNGLIGFYSKFGNVDDVEWLFEGMRVRDVITWTEMVTAYMEFGLVNLALKVFDEMPEKNSVSYNTVLAGFCRNEQGFEAMRLFVRMVEEGLELTDFSLTSVVDACGLLGDYKVSKQVHGFAVKFGFGSNGYVEAALLDMYTRCGRMVDAGKMFLRWELEEFSSVVWTAMICGYARNGQPEEAIYLFHVGRSDGKVIMDEVAAASMLGLCGTIGHLDMGKQIHCHVIKCGLGFNLEVGNAVVSMYFKCGSVDDAMKVFGDMPCTDIVTWNTLISGNLMHRQGDRALEIWVEMLGEGIKPNQVTFVLIISAYRQTNLNLVDDCRNLFNSMRTVYQIEPTSRHYASFISVLGHWGLLQEALETINNMPFQPSALVWRVLLDGCRLHKNELIGKWAAQNILALEPKDPSTFILVSNLYSASGRWDRSEMVREDMREKGFRKHPAQSWIVCEKKINSFYPRDRSHPQEKDIQRGLESKVDVGSAITYMYAKCGRLDIAYEFFRGMFEKDSVCWNSMISSFSRNGKPEMAIDLFRQMGTIGAKFDSVTRNSICSLCCCKFNSTIL 860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01737 860 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 805 839 IPR002885 -
Gma03g01737 860 Pfam E motif 684 745 IPR046848 -
Gma03g01737 860 PANTHER - 769 851 - -
Gma03g01737 860 Pfam PPR repeat family 359 406 IPR002885 -
Gma03g01737 860 Pfam PPR repeat family 127 175 IPR002885 -
Gma03g01737 860 Pfam PPR repeat family 565 611 IPR002885 -
Gma03g01737 860 Pfam PPR repeat family 230 276 IPR002885 -
Gma03g01737 860 Pfam PPR repeat family 804 852 IPR002885 -
Gma03g01737 860 Pfam PPR repeat 303 329 IPR002885 -
Gma03g01737 860 Pfam PPR repeat 539 561 IPR002885 -
Gma03g01737 860 Pfam PPR repeat 465 488 IPR002885 -
Gma03g01737 860 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 360 394 IPR002885 -
Gma03g01737 860 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 463 497 IPR002885 -
Gma03g01737 860 PANTHER - 64 355 - -
Gma03g01737 860 PANTHER - 347 772 - -
Gma03g01737 860 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 704 738 IPR002885 -
Gma03g01737 860 Gene3D Tetratricopeptide repeat domain 282 414 IPR011990 GO:0005515
Gma03g01737 860 Gene3D Tetratricopeptide repeat domain 763 858 IPR011990 GO:0005515
Gma03g01737 860 PANTHER - 769 851 - -
Gma03g01737 860 PANTHER - 347 772 - -
Gma03g01737 860 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 565 599 IPR002885 -
Gma03g01737 860 Gene3D Tetratricopeptide repeat domain 141 281 IPR011990 GO:0005515
Gma03g01737 860 Gene3D Tetratricopeptide repeat domain 617 761 IPR011990 GO:0005515
Gma03g01737 860 Gene3D Tetratricopeptide repeat domain 415 492 IPR011990 GO:0005515
Gma03g01737 860 Gene3D Tetratricopeptide repeat domain 493 616 IPR011990 GO:0005515
Gma03g01737 860 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 329 359 IPR002885 -
Gma03g01737 860 PANTHER - 64 355 - -
Gma03g01737 860 TIGRFAM PPR: pentatricopeptide repeat domain 807 832 IPR002885 -
Gma03g01737 860 TIGRFAM PPR: pentatricopeptide repeat domain 362 395 IPR002885 -
Gma03g01737 860 TIGRFAM PPR: pentatricopeptide repeat domain 465 488 IPR002885 -
Gma03g01737 860 TIGRFAM PPR: pentatricopeptide repeat domain 539 566 IPR002885 -
Gma03g01737 860 TIGRFAM PPR: pentatricopeptide repeat domain 567 600 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01737 Gma-Chr3 43475871 43479637 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01737 256 851 Glycoside Hydrolase AT3G49170 26.917 5.16e-41 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01737 - - gmx:100784704 1534.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g01737 03 43475871 43479637 Gma03g01737 03 43475871 43479637 ECH