Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01711 ATGGTGAAGGCCTACCTTCGATACGAGCCGGCGGCGTCGTTTGGAGTGATAGCGTCGGTGGTTTCCAACATAACATACGACAGCTCTGGCAAGCACCTCCTCTCTCCGGCACTCGAGAAGGTCGGCGTCTGGCACGTGCGCCAGGGCCTCTGCACCAAAACCCTAACTCCTTCCTCTTCGTCGCGCGGTCCTTCTCTCGCCGTCAATTCCATCGCCTCCTCCCCTTCCTCCCTGATTGCTAGTGGTTACGGTGATGGTAGCATAAGGATTTGGGACTCTGATAAAGGAACGTGTGAGACTACGTTGAATGGACACAAGGGAGCTGTCACTGCTCTTCGTTACAACAAGACTGGCTCCTTGCTCGCCTCTGGTAGCAAGGATAATGATGTTATTTTGTGGGATGTGGTTGGCGAGACTGGACTCTTTCGCCTTCGCGGTCACCGCGATCAGGTAACTGACGTTGTTTTCCTGAGTTCTGGGAAAAAGCTTGTTAGTTCCTCCAAAGACAAGTTCTTGAGAGTGTGGGATATTGATACCCAGCATTGTATGCAAATTGTTGGTGGCCATCATAGTGAAATATGGTCCCTAGATGTTGATCTGGATGAAAGATATCTGGTCACTGGTTCTGCGGATAATGAACTTCGTTTTTATTCAATCAAGCATGAGTCTGCGGATGGGGAGTCTGTAAATGGCGGTGAAGAATCTTCCATTCAAAATAAATGGGAAGTGTTGAGGCATTTTGGTGAAATTCAGCGGCAAAGTAAGGATAGAGTTGCGACGGTGCAGTTCAACAAGTCAGGAAGTCTGCTAGCTTGCCAAGTTGCTGGAAAAACGGTAGAAATATACCGTATATTGGATGATGCTGAAGCAAAGCGCAAAGCAAAACGAAGGGTTCACCGTAAGAAAGAGAAGAAACATAGTAAAGAGGCTTTGGAGGGAATAGAAAATGTAGACGGGAATAATGAGAACAAAGGAAATGATTCTTCTGTCACTCACGGGCCCATTGAAACAAGTAACCCCACAGTTACTGTGCCTGATGTTTTTAAGCTGTTGCATACTATCAGAGCTAGCAAAAAGATATGCTCCATTTCTTTCTGTCCAATCACTCCGAAGAATTCACTGGGTAGTTTAGCATTGTCCCTCAACAATAATCTACTTGAGTTTTACTCCATTGAACAAGGGGAAACCAAAAAAACACTTGCTATTGATCTTCAAGGGCACCGTTCTGATGTAAGAAGTGTCACACTTAGTTCAGACAACACTTTTCTGATGTCAACAAGTCACAATGCTGTAAAGATTTGGAACCCAAGTACTGGCTCTTGCCTAAGGACCATTGATTCTGGGTATGGACTATGCAGTTTAATTCTTCCCACCAACAAGTATGGACTTGTTGGAACTAAAGATGGAACCATAGAAATTATTGACATTGGAAGTGGAACTTGTGTTGAAGTAATGGAAGCTCATGGTGGTTCTGTTCGCTCAATTGCTGCCCTACCGCATAAAAATGGTTTTGTCACAGGAAGTGCAGATCATGATGTGAAATTTTGGGAGTACCAAATTAAGCAAAAACCCGGTCAAGCTGCTAAGCAACTCATTGTGTCAAATGTCAGTACCATGAAAATGAATGATGATGCTCTTGTTGTCGCAATTAGCCCTGATGCTAAATATATTGCTGTTGCTCTCTTGGATAGTACTGTGAAGGTTCACTTTGCAGACACATTCAAATTCTTCCTTTCATTATATGGCCACAAGCTGCCTGTTCTGTGTATGGATATCTCCTCAGATGGAGATTTAATTGTAACTGGCTCTGCAGATAAAAATATAAAAATCTGGGGTTTGGACTTTGGTGACTGTCATAAATCCATCTTCGCGCATGCTGACAGTGTTATGGCAGTGCAATTTGTTCCCAAGACACATTATGTGTTCAGTGTTGGAAAAGATCGCCTAGTAAAATATTGGGATGCAGATAAATTTGAGCTGCTGTTGACTCTCGAAGGACATCATGCTGATATTTGGTGTCTTGCAGTCAGTAATCGTGGTGATTTTATCGTCACTGGATCTCATGATCGTTCTATTCGCCGCTGGGATCGCACTGAAGAGCAGTTCTTCATTGAGGAAGAAAAGGAGAAAAGGTTGGAGGAAATGTTTGAGGCTGATATTGACAATGCATTTGAAAACAAATATGCATTGAAGGAAGAAATACCAGAGGAGGGAGCTGTGGCTTTAGCTGGGAAACAAACCCAGGAAACCCTTTCTGCAACTGACTTAATTATTGAGAGACTAGACATTGCAGAAGCTGAAGAAAAGTGTATTGCAGAACATCAGGAGAAAAATAGCAGAAATGTTGCTGTTTTCCAAGCAAATCCGCTTATGAATGGGCTTTCACCTTCTGACTATGTTCTAAGTGCATTTTCAGATGTTCACTCCAATGATTTGGAGCAAACATTATTGGCTTTACCATTTTCAGATGCTTTGAAGCTTCTGTCGTACTTGAAAGACTGGACTTCATACTCTGATAAGGTTGAGCTTGTTTGCAGAATAGGCACGCTGCTGTTGCAGACACATTACAACCAGCTTCTTGCCACGCCAGCTGCCCGACCTATCTTGACAGTTTTCAGTGACATTTTTTATGAAAGGGTCAAGGGATGGAAAGACATCTTTGGTTTTAACCTTGCCGCCATGGATCATATTCAGCAAATGATGGCTTCAAGATCAGATGCTCTTTTTCATGATGCAAGATCAAAACTGCTAGAGATACGTGCTCGGCAATCCAAACGCTTAGAAGAAAGGTCTGATACTGGGGAAGTGAAGCGGAAGAAAAAGAAGACATAA 2832 0.4333 MVKAYLRYEPAASFGVIASVVSNITYDSSGKHLLSPALEKVGVWHVRQGLCTKTLTPSSSSRGPSLAVNSIASSPSSLIASGYGDGSIRIWDSDKGTCETTLNGHKGAVTALRYNKTGSLLASGSKDNDVILWDVVGETGLFRLRGHRDQVTDVVFLSSGKKLVSSSKDKFLRVWDIDTQHCMQIVGGHHSEIWSLDVDLDERYLVTGSADNELRFYSIKHESADGESVNGGEESSIQNKWEVLRHFGEIQRQSKDRVATVQFNKSGSLLACQVAGKTVEIYRILDDAEAKRKAKRRVHRKKEKKHSKEALEGIENVDGNNENKGNDSSVTHGPIETSNPTVTVPDVFKLLHTIRASKKICSISFCPITPKNSLGSLALSLNNNLLEFYSIEQGETKKTLAIDLQGHRSDVRSVTLSSDNTFLMSTSHNAVKIWNPSTGSCLRTIDSGYGLCSLILPTNKYGLVGTKDGTIEIIDIGSGTCVEVMEAHGGSVRSIAALPHKNGFVTGSADHDVKFWEYQIKQKPGQAAKQLIVSNVSTMKMNDDALVVAISPDAKYIAVALLDSTVKVHFADTFKFFLSLYGHKLPVLCMDISSDGDLIVTGSADKNIKIWGLDFGDCHKSIFAHADSVMAVQFVPKTHYVFSVGKDRLVKYWDADKFELLLTLEGHHADIWCLAVSNRGDFIVTGSHDRSIRRWDRTEEQFFIEEEKEKRLEEMFEADIDNAFENKYALKEEIPEEGAVALAGKQTQETLSATDLIIERLDIAEAEEKCIAEHQEKNSRNVAVFQANPLMNGLSPSDYVLSAFSDVHSNDLEQTLLALPFSDALKLLSYLKDWTSYSDKVELVCRIGTLLLQTHYNQLLATPAARPILTVFSDIFYERVKGWKDIFGFNLAAMDHIQQMMASRSDALFHDARSKLLEIRARQSKRLEERSDTGEVKRKKKKT 943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01711 943 ProSiteProfiles Trp-Asp (WD) repeats profile. 61 101 IPR001680 GO:0005515
Gma03g01711 943 MobiDBLite consensus disorder prediction 319 338 - -
Gma03g01711 943 ProSitePatterns Trp-Asp (WD) repeats signature. 121 135 IPR019775 -
Gma03g01711 943 ProSiteProfiles Trp-Asp (WD) repeats profile. 144 185 IPR001680 GO:0005515
Gma03g01711 943 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 580 614 - -
Gma03g01711 943 ProSiteProfiles Trp-Asp (WD) repeats profile. 186 220 IPR001680 GO:0005515
Gma03g01711 943 Pfam Dip2/Utp12 Family 798 898 IPR007148 -
Gma03g01711 943 ProSiteProfiles Trp-Asp (WD) repeats profile. 622 663 IPR001680 GO:0005515
Gma03g01711 943 PANTHER WD REPEAT CONTAINING PROTEIN 3 WDR3 1 942 - -
Gma03g01711 943 SMART WD40_4 137 176 IPR001680 GO:0005515
Gma03g01711 943 SMART WD40_4 478 517 IPR001680 GO:0005515
Gma03g01711 943 SMART WD40_4 657 696 IPR001680 GO:0005515
Gma03g01711 943 SMART WD40_4 240 283 IPR001680 GO:0005515
Gma03g01711 943 SMART WD40_4 615 654 IPR001680 GO:0005515
Gma03g01711 943 SMART WD40_4 438 475 IPR001680 GO:0005515
Gma03g01711 943 SMART WD40_4 179 218 IPR001680 GO:0005515
Gma03g01711 943 SMART WD40_4 95 134 IPR001680 GO:0005515
Gma03g01711 943 SMART WD40_4 54 92 IPR001680 GO:0005515
Gma03g01711 943 SMART WD40_4 397 435 IPR001680 GO:0005515
Gma03g01711 943 SMART WD40_4 573 612 IPR001680 GO:0005515
Gma03g01711 943 SMART WD40_4 532 570 IPR001680 GO:0005515
Gma03g01711 943 PRINTS G protein beta WD-40 repeat signature 121 135 IPR020472 -
Gma03g01711 943 PRINTS G protein beta WD-40 repeat signature 163 177 IPR020472 -
Gma03g01711 943 PRINTS G protein beta WD-40 repeat signature 599 613 IPR020472 -
Gma03g01711 943 Pfam WD domain, G-beta repeat 51 92 IPR001680 GO:0005515
Gma03g01711 943 Pfam WD domain, G-beta repeat 578 611 IPR001680 GO:0005515
Gma03g01711 943 Pfam WD domain, G-beta repeat 96 134 IPR001680 GO:0005515
Gma03g01711 943 Pfam WD domain, G-beta repeat 479 516 IPR001680 GO:0005515
Gma03g01711 943 Pfam WD domain, G-beta repeat 181 217 IPR001680 GO:0005515
Gma03g01711 943 Pfam WD domain, G-beta repeat 404 435 IPR001680 GO:0005515
Gma03g01711 943 Pfam WD domain, G-beta repeat 142 176 IPR001680 GO:0005515
Gma03g01711 943 Pfam WD domain, G-beta repeat 659 696 IPR001680 GO:0005515
Gma03g01711 943 Gene3D - 335 448 IPR015943 GO:0005515
Gma03g01711 943 Gene3D - 657 708 IPR015943 GO:0005515
Gma03g01711 943 SUPERFAMILY YVTN repeat-like/Quinoprotein amine dehydrogenase 349 612 IPR011044 -
Gma03g01711 943 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 43 701 IPR011047 -
Gma03g01711 943 CDD WD40 404 696 - -
Gma03g01711 943 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 102 135 - -
Gma03g01711 943 ProSitePatterns Trp-Asp (WD) repeats signature. 163 177 IPR019775 -
Gma03g01711 943 ProSiteProfiles Trp-Asp (WD) repeats profile. 485 517 IPR001680 GO:0005515
Gma03g01711 943 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 664 696 - -
Gma03g01711 943 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 622 654 - -
Gma03g01711 943 ProSiteProfiles Trp-Asp (WD) repeats profile. 580 621 IPR001680 GO:0005515
Gma03g01711 943 Gene3D - 19 320 IPR015943 GO:0005515
Gma03g01711 943 CDD WD40 98 517 - -
Gma03g01711 943 MobiDBLite consensus disorder prediction 293 338 - -
Gma03g01711 943 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 485 517 - -
Gma03g01711 943 ProSiteProfiles Trp-Asp (WD) repeats profile. 664 696 IPR001680 GO:0005515
Gma03g01711 943 Coils Coil 285 305 - -
Gma03g01711 943 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 144 179 - -
Gma03g01711 943 Gene3D - 449 647 IPR015943 GO:0005515
Gma03g01711 943 ProSiteProfiles Trp-Asp (WD) repeats profile. 102 135 IPR001680 GO:0005515
Gma03g01711 943 ProSiteProfiles Trp-Asp (WD) repeats profile. 404 444 IPR001680 GO:0005515
Gma03g01711 943 PANTHER WD REPEAT-CONTAINING PROTEIN 3 1 942 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01711 Gma-Chr3 43287752 43296499 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01711 577 705 Miscellaneous Gene Families AT5G08390 27.907 5.62e-11 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01711 K14556 - gmx:100800955 1812.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g01711 03 43287752 43296499 Gma03g01711 03 43287752 43296499 ECH
Gma19g01763 19 46914823 46923223 Gma03g01711 03 43287752 43296499 GST