Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01691 ATGTCCATTTTGGTCTCAAAAGCTACTGCGGGAATGCAAATGCAGGCTTTCCCTGTCATTCCCATTCCAACTTCCACTTCCATGCGTTCAATCTCTCACTCCTCTCCTTTCCGTCTTCATTCAGCTGCAAGCATCACCACCCTCCTCAAAGCCTGCAAGAAACGTGAACACCTCGAACAAGTGCACGCGTGCATCATCCATCGCGGCCTCGAGCAAGACCACTTCCTCGTTTTCCTCTTCATTTCCCGCGCGCACACCCTCCTCTCCACTCTCTCCTACGCCTCCTCCGTCTTCCACCGCGTTCTCGCCCCTTCCACCGTCCTCTGGAACACTCTCATCAAATCCCACTGCCAAAAGAATCTCTTTTCCCACACCCTCTCCGCCTTCGCTCGCATGAAGGCACATGGGGCACTCCCCGATAGCTTCACCTACCCTTCTGCCATTAAGGCCTGTTCCGGCACGTGCAAGGCAAGGGAGGGAAAATCGCTTCATGGCTCCGCGTTCCGGTGCGGCGTCGACCAGGATCTCTACGTGGGCACCAGTTTGATCGACATGTATGGGAAGTGCGGGGAGATTGCTGATGCTCGTAAGGTGTTTGATGGAATGTCTGACAGGAATGTGGTTTCCTGGACTGCTATGCTTGTTGGGTACGTTGCTGTTGGGGATGTTGTTAAGGCCAGGAAGCTGTTTGACGAGATGCCTCACAGAAATGTGGCTTCTTGGAACTCAATGTTGCAGGGCTTTGTGAAAAtgggggatttgagcggtgctagaggcgtgtttgacgcaatgcctgagaagaatgttgtttctttcaccaccatgattgatgggtatgccaaggctggtgacatggcggcggcgaggttcttgtttgattgttctctggagaaggatgttgttgcttggatgctgatggaagggctaACTCCGGATGAGGTTGCCTTCACAGTCATCCTCACAGCTTGTAGTCGTGCTGGGCTTGTTGATGAGGGACGGAACTACTTCCAGTCCATGAAGCAAAAATACTGCATTAGTCCATTGCCTGATCACTATGCATGTATGGTGGATCTTCTAAGCCGGTCAGGGCACATAAGGGATGCTTATGAACTTATAAAATTAATCCCCCGGGAGCCTCATGCTGGAGCCTGGGGTGCACTTCTTGGGGCATGTAAACTATACGGTGATTCAGAGTTGGGAGAGATTGTTGCTAATCGACTTTTTGAGCTTGAGCCTCTAAATGCAGCTAATTATGTGCTGTTGTCCGACATCTATGCAGCAGCAGAGCGATGGATAGATGTTTCCCTTGTGAGAAGTAAGATGAGGGAAAGGAGAGTGCGGAAGATACCTGGTTCCAGTAAAATTTAG 1368 0.4444 MSILVSKATAGMQMQAFPVIPIPTSTSMRSISHSSPFRLHSAASITTLLKACKKREHLEQVHACIIHRGLEQDHFLVFLFISRAHTLLSTLSYASSVFHRVLAPSTVLWNTLIKSHCQKNLFSHTLSAFARMKAHGALPDSFTYPSAIKACSGTCKAREGKSLHGSAFRCGVDQDLYVGTSLIDMYGKCGEIADARKVFDGMSDRNVVSWTAMLVGYVAVGDVVKARKLFDEMPHRNVASWNSMLQGFVKMGDLSGARGVFDAMPEKNVVSFTTMIDGYAKAGDMAAARFLFDCSLEKDVVAWMLMEGLTPDEVAFTVILTACSRAGLVDEGRNYFQSMKQKYCISPLPDHYACMVDLLSRSGHIRDAYELIKLIPREPHAGAWGALLGACKLYGDSELGEIVANRLFELEPLNAANYVLLSDIYAAAERWIDVSLVRSKMRERRVRKIPGSSKI 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01691 455 Gene3D Tetratricopeptide repeat domain 299 453 IPR011990 GO:0005515
Gma03g01691 455 Gene3D Tetratricopeptide repeat domain 118 236 IPR011990 GO:0005515
Gma03g01691 455 Gene3D Tetratricopeptide repeat domain 237 298 IPR011990 GO:0005515
Gma03g01691 455 PANTHER OJ991214_12.4 PROTEIN 43 267 - -
Gma03g01691 455 PANTHER OJ991214_12.4 PROTEIN 257 296 - -
Gma03g01691 455 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 105 139 IPR002885 -
Gma03g01691 455 Pfam PPR repeat 208 237 IPR002885 -
Gma03g01691 455 Pfam PPR repeat 240 269 IPR002885 -
Gma03g01691 455 Pfam PPR repeat 314 344 IPR002885 -
Gma03g01691 455 Pfam PPR repeat 270 298 IPR002885 -
Gma03g01691 455 Pfam PPR repeat 180 207 IPR002885 -
Gma03g01691 455 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 175 209 IPR002885 -
Gma03g01691 455 Pfam PPR repeat family 104 151 IPR002885 -
Gma03g01691 455 TIGRFAM PPR: pentatricopeptide repeat domain 180 208 IPR002885 -
Gma03g01691 455 TIGRFAM PPR: pentatricopeptide repeat domain 107 140 IPR002885 -
Gma03g01691 455 TIGRFAM PPR: pentatricopeptide repeat domain 270 293 IPR002885 -
Gma03g01691 455 TIGRFAM PPR: pentatricopeptide repeat domain 240 270 IPR002885 -
Gma03g01691 455 TIGRFAM PPR: pentatricopeptide repeat domain 314 342 IPR002885 -
Gma03g01691 455 TIGRFAM PPR: pentatricopeptide repeat domain 208 237 IPR002885 -
Gma03g01691 455 PANTHER OS07G0578800 PROTEIN-RELATED 304 453 IPR045215 GO:0003723|GO:0009451
Gma03g01691 455 PANTHER OS07G0578800 PROTEIN-RELATED 257 296 IPR045215 GO:0003723|GO:0009451
Gma03g01691 455 PANTHER OS07G0578800 PROTEIN-RELATED 43 267 IPR045215 GO:0003723|GO:0009451
Gma03g01691 455 PANTHER OJ991214_12.4 PROTEIN 304 453 - -
Gma03g01691 455 Pfam E motif 394 455 IPR046848 -
Gma03g01691 455 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 312 346 IPR002885 -
Gma03g01691 455 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 237 271 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01691 Gma-Chr3 43100408 43102147 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01691 44 455 Glycoside Hydrolase AT3G49170 32.018 8.88e-69 233
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01691 - - gmx:100795649 612.453