Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gma03g01599 | ATGGCCATAACCGCCACCATTTCCGTTCCCTTCACATCCCCCAGTCGCCGCACTCTCGCCTCCGTCAATAGCCTCTCTCCGCGTTCTACCCGATCCACTTTGCCCACACCGCAACGCACTTTCAAATACCCTAATTCGCGCCTCGTCGTGTCTTCCATGAGCACCGAAACAGCCGTCAAAACTTCATCCGCCTCCTTCCTCAACCGCAAGGAGTCCGGCTTCCTCCATTTCGCCAAGTACCACGGCCTCGGAAACGACTTCGTTTTGATTGACAATAGAGACTCCTCCGAGCCCAAGATCAGTGCTGAGAAAGCGGTGCAACTGTGTGATCGGAACTTCGGCGTTGGAGCTGACGGAGTTATCTTTGTCTTGCCTGGCATCAGTGGCACCGATTATACCATGAGGATTTTTAACTCTGATGGTAGTGAGCCTGAGATGTGTGGCAATGGAGTGCGATGCTTTGCCAAATTTGTTTCTCAGCTTGAGAATTTACATGGGAGGCATAGTTTTACCATTCATACTGGTGCTGGTCTGATTATTCCTGAAGTCTTGGAGGATGGAAATGTCAGAGTTGATATGGGGGAACCGATTCTTAAAGCCTCAGATGTGCCTACTAAATTACATGCAAATAAGGATAATGCTGTTGTTAAATCAGAACTAGTTGTAGATGGAGTTATCTGGCATGTGACCTGTGTCAGCATGGGAAATCCACACTGTGTAACTTTCAGTAGAGAAGGAAGCCAGAATTTGCTTGTTGATGAATTGAAGCTAGCAGAAATTGGCCCAAAATTTGAACATCATGAGGTGTTCCCTGCACGAACTAACACAGAGTTTGTACAAGTGTTGTCTAATTCTCACTTGAAAATGTGTGTCTGGGAGCGGGGAGCAGGAGCAACCCTAGCCTGTGGAACTGGAGCTTGTGCTACTGTTGTTGCAGCAGTTCTTGAGGGTCGTGCTGGGAGGAATTGCACGGTTGATCTACCTGGAGGACCTCTTCAGATTGAATGGAGGGAGGAAGATAATCATGTTTATATGACAGGCTCAGCCGATGTAGTTTATTACGGATCTTTGCCCCTTTAA | 1080 | 0.4778 | MAITATISVPFTSPSRRTLASVNSLSPRSTRSTLPTPQRTFKYPNSRLVVSSMSTETAVKTSSASFLNRKESGFLHFAKYHGLGNDFVLIDNRDSSEPKISAEKAVQLCDRNFGVGADGVIFVLPGISGTDYTMRIFNSDGSEPEMCGNGVRCFAKFVSQLENLHGRHSFTIHTGAGLIIPEVLEDGNVRVDMGEPILKASDVPTKLHANKDNAVVKSELVVDGVIWHVTCVSMGNPHCVTFSREGSQNLLVDELKLAEIGPKFEHHEVFPARTNTEFVQVLSNSHLKMCVWERGAGATLACGTGACATVVAAVLEGRAGRNCTVDLPGGPLQIEWREEDNHVYMTGSADVVYYGSLPL | 359 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gma03g01599 | 359 | Hamap | Diaminopimelate epimerase [dapF]. | 75 | 359 | IPR001653 | GO:0008837|GO:0009089 | |
| Gma03g01599 | 359 | ProSitePatterns | Diaminopimelate epimerase signature. | 138 | 152 | IPR018510 | GO:0005737|GO:0008837|GO:0009089 | |
| Gma03g01599 | 359 | PANTHER | DIAMINOPIMELATE EPIMERASE, CHLOROPLASTIC | 35 | 358 | IPR001653 | GO:0008837|GO:0009089 | |
| Gma03g01599 | 359 | MobiDBLite | consensus disorder prediction | 19 | 38 | - | - | |
| Gma03g01599 | 359 | Gene3D | Diaminopimelate Epimerase; Chain A, domain 1 | 49 | 208 | - | - | |
| Gma03g01599 | 359 | Gene3D | Diaminopimelate Epimerase; Chain A, domain 1 | 209 | 343 | - | - | |
| Gma03g01599 | 359 | SUPERFAMILY | Diaminopimelate epimerase-like | 75 | 204 | - | - | |
| Gma03g01599 | 359 | Pfam | Diaminopimelate epimerase | 77 | 197 | IPR001653 | GO:0008837|GO:0009089 | |
| Gma03g01599 | 359 | Pfam | Diaminopimelate epimerase | 231 | 351 | IPR001653 | GO:0008837|GO:0009089 | |
| Gma03g01599 | 359 | PANTHER | DIAMINOPIMELATE EPIMERASE, CHLOROPLASTIC | 35 | 358 | - | - | |
| Gma03g01599 | 359 | SUPERFAMILY | Diaminopimelate epimerase-like | 218 | 357 | - | - | |
| Gma03g01599 | 359 | TIGRFAM | DapF: diaminopimelate epimerase | 76 | 357 | IPR001653 | GO:0008837|GO:0009089 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gma03g01599 | Gma-Chr3 | 42225625 | 42229362 | Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gma03g01599 | K01778 | - | gmx:100807528 | 708.368 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Gma19g01646 | 19 | 45857221 | 45861416 | Gma03g01599 | 03 | 42225625 | 42229362 | GST |