Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01558 ATGTGTGGTAAGATGAATAATATAGTAGGAAAAAACACTGTTAAATATTGCAATAGCTCTGCGTCGTGTTTGGAATCGGAATCTGGTGTTTCGTACAAGTCCAATGAGGTTAAGTTGCTTGAATCACTTATTTCGAATGGGAATTGGGATGAAAGCATTGGTTATCTCAATTCGATAAAGGATGTGTTGGGTGAAACCAGGGAATCTACTCTGTTTCTTGTATTCAAACAGTGTGTTATGGAGTATTTGAATTGCGGCGAGGATGCGTTAGCTTTAGGGGTGTTGAGGAAGCAGGTTTCTGCCTTGGATGTGGACAAGTGCAAAGTTCACAGCTTGGCTAAGTGCTTGCTTTCGTTTAATAAGGATAGGGAGTTAGGTGCAGTTGATGGTGGTGATGTTGTTGTTGTTGTACATGACTTGCTAAAGAAGTTGTTAGAGGATTTGGAGAAGTTGTTTCCTCCTCCGGTTTCGGTGCCTGAAGGAAGCAGGGATCAGATTCCTACTTCAACGACTCAGATATTGACTGGACATAGAAATGAAGTTTGGTTTGTTCAATTTTCTAATAATGGGGAGTACCTGGTCTCTTCATCCAATGATTGCACAGCCATCATATGGAAGGTGCTGGAGGATGGGAAATTGACATTGAAACACACACTTTGTGGTCACCAACATGCTGTATCTTTTGTAGCATGGAGTCCTGATGACACCAAGTTGCTTACATGTGGGAACACAGAAGTTTTGAAGCCGTGGGATGTTGAAACAGGTACATGCAAGCACACATTTGGGAATCAAGGTTTTGTTGTCAGCTCTTGTGCCTGGTTTCCCAACTCAAAACAGTTTGGGTGTGGCAGCTCTGACCCTGAAAAGGGTGTTTGCATGTGGGATTGTGATGGAAACGTGATAAAATCATGGATAGGAATGAGGATGCCCAAGGTCGTCGATCTTGCTGTTACTCCAGATGGTGAGTATCTTATCAGCATATTCATGGATAAAGAAATTCGGATTCTGCACATGGGAACCAGTGCCGAGCAAGTCATTTCAGAGGAGCACCCAATCACGTCCCTTTCAGTTTCAGGAGATAGCAAGTTCTTCATTGTCAATCTAAACAGCCAAGAGATTCATATGTGGGATGTTGCTGGGAAATGGGATAAGCCATTGAGGTTTATGGGCCACAAGCAACACAAATATGTGATAAGGTCATGCTTTGGTGGATTGAATAACACGTTTATCGCCAGTGGTTGTGAGAATTCACAGGTAGTGTACATTTGGAACTGCAGGAACTCTAGGCCTATAGAAGTTCTATCTGGGCACTCCATCACTGTGAACTGTGTGAGCTGGAACCCCAAAATACCTCAAATGTTGGCATCTGCAAGTGATGATTATACAATTCGTGCAGAGACAGGCATAATCATCACATCTGCACTCAGCACTTTGCGGCTTCCTAACCGTGTGCTTGCACGGACCCTAATTGTTCCTTCGACGACTCCACGACATCCACCACCACGAATGTCGTGCCGGTATTGGAGTCGTCTTGCCCAAGCTCTGGAGCCATCACGTGATATCCCACTGAGCCAAGAGCCAGAGCTCGAGGAACAACACCATTCTTGA 1608 0.4428 MCGKMNNIVGKNTVKYCNSSASCLESESGVSYKSNEVKLLESLISNGNWDESIGYLNSIKDVLGETRESTLFLVFKQCVMEYLNCGEDALALGVLRKQVSALDVDKCKVHSLAKCLLSFNKDRELGAVDGGDVVVVVHDLLKKLLEDLEKLFPPPVSVPEGSRDQIPTSTTQILTGHRNEVWFVQFSNNGEYLVSSSNDCTAIIWKVLEDGKLTLKHTLCGHQHAVSFVAWSPDDTKLLTCGNTEVLKPWDVETGTCKHTFGNQGFVVSSCAWFPNSKQFGCGSSDPEKGVCMWDCDGNVIKSWIGMRMPKVVDLAVTPDGEYLISIFMDKEIRILHMGTSAEQVISEEHPITSLSVSGDSKFFIVNLNSQEIHMWDVAGKWDKPLRFMGHKQHKYVIRSCFGGLNNTFIASGCENSQVVYIWNCRNSRPIEVLSGHSITVNCVSWNPKIPQMLASASDDYTIRAETGIIITSALSTLRLPNRVLARTLIVPSTTPRHPPPRMSCRYWSRLAQALEPSRDIPLSQEPELEEQHHS 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01558 535 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 33 90 IPR006595 -
Gma03g01558 535 Gene3D - 160 465 IPR015943 GO:0005515
Gma03g01558 535 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 174 207 - -
Gma03g01558 535 ProSiteProfiles Trp-Asp (WD) repeats profile. 434 464 IPR001680 GO:0005515
Gma03g01558 535 PANTHER WD REPEAT PROTEIN 26-RELATED 17 161 - -
Gma03g01558 535 PANTHER WD REPEAT PROTEIN 26-RELATED 162 464 - -
Gma03g01558 535 SMART WD40_4 254 295 IPR001680 GO:0005515
Gma03g01558 535 SMART WD40_4 212 251 IPR001680 GO:0005515
Gma03g01558 535 SMART WD40_4 167 206 IPR001680 GO:0005515
Gma03g01558 535 SMART WD40_4 297 337 IPR001680 GO:0005515
Gma03g01558 535 SMART WD40_4 381 424 IPR001680 GO:0005515
Gma03g01558 535 SMART WD40_4 427 467 IPR001680 GO:0005515
Gma03g01558 535 SMART WD40_4 339 377 IPR001680 GO:0005515
Gma03g01558 535 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 219 255 - -
Gma03g01558 535 ProSiteProfiles Trp-Asp (WD) repeats profile. 174 207 IPR001680 GO:0005515
Gma03g01558 535 ProSiteProfiles Trp-Asp (WD) repeats profile. 219 260 IPR001680 GO:0005515
Gma03g01558 535 SMART ctlh 33 90 IPR006595 -
Gma03g01558 535 CDD WD40 171 464 - -
Gma03g01558 535 SUPERFAMILY WD40 repeat-like 164 464 IPR036322 GO:0005515
Gma03g01558 535 Pfam WD domain, G-beta repeat 430 464 IPR001680 GO:0005515
Gma03g01558 535 Pfam WD domain, G-beta repeat 215 243 IPR001680 GO:0005515
Gma03g01558 535 Pfam WD domain, G-beta repeat 170 206 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01558 Gma-Chr3 41813390 41818355 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01558 172 325 Miscellaneous Gene Families AT5G08390 29.221 3.76e-13 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01558 K22382 - gmx:100818922 798.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g01558 03 41813390 41818355 Gma03g01558 03 41813390 41818355 ECH
Gma19g01613 19 45509883 45513775 Gma03g01558 03 41813390 41818355 GST