Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01438 ATGGAGGGATTTCCCCGAAAATCTGTCATCAGCAAGCTTGTAACAAGTTATGTGGACAGCCTTGATATTCAATATCTAGAAAAAGCTTATGAATTGGTTGAATGTGCCATTGAGGAAGGTAAACAAGTCTTGTTAGAAAAGGAGGTGCTGATCTACGTTAGCTTTGGCCTTGCAAAAGCCAGACTACCAGTTCCATCATCAACTGTCTTAAGAAAGATGATAGCTATCGAGCATTTCACCCCAGTCACTGCTTGGTCTGCAGTTTTGGCACACATGTCACAAACAGCAGAGGGAAGTTACCTTGCTGCTGAGTTGATTCTTGAAATAGGTTATTTGTTCCAGAATAATAGAGTAGATCTGCGTAAGAAGAGCAATGCACCTTTGATAGCCATGAAACCAAACGCTGCTGCTTTTAACATTGCTTTGGCAGGGTGTCTCTTATTTGAGACATCTAGGAAGGCAGAGGAGCTTCTTGATATGATGCCTCGAATTGGTGTCAAAGCTGATGCAAATTTACTGATAATAATGGCACGTGTATATGAGAGAAATGGGCAAAGAGAAGAGCTCAAGAAGCTGCAAAGGCACATGGAGGAAGCTCCAAATCTAAATGATTTAGAGTTCCGACAGTTCTATAATTGTTTGTTGACATGCCATTTGAAATTTAGGGATCTAGATTCTGCATCAAACATGGTTTTGGAAATGCTTAGGAAAGCAAAGGAAGCAAGAAATTCTCTTGCAGCTGCCAAATTTATGACAAATGCTGCTGAAATTGATCATAGCCACTCTCCTGGACTGGCTTCTGTGCATAGTTTGAACAACAGTAAAGATTTATATAGTTTACAAAATAACAGGCCAATTACAAATGCTGTATTATCTTATGAGGAGTTTTCTAAAGATAGAAATTTCTTAAAGCTTGAATCAGAGTCAAAAGCTATACTTAGTTCATTATTAGCTAAGTTGCAGATGCAGGTGAATTTGATTACAACCAAACATGAAAGAGAAGATTCTCCCTTTTCCAATGACAACTCAGCCTTGGTTCATGTTATTAATGCATGCATTTCACTTGGATGGCTGGATCAAGCACACGATCTCCTTGAAGAGATGCGTCTAGCTGGAGTTAGAACTGGTTCATCTGTATACTCCTCTCTTTTGAAAGCATATTGCCGAGCAAATAGAGCTGCAGATGTCACATCACTTCTGAGAGATGCTAAGATAGCTGGCATCCAGCTTGACTCAAGCTCTTATGAGGCAATGATTCAATCCAGGGTGCTCCAGCAAGACACACAGGGAGCACTCCAACTATTTAAAGAGAGGAAAGAGGCTAGAATTCCAAAAGTCACTCAACAAAACTCTGGCTTGATGGCCAAAAGTGGTACAGAGACTGATGAAGCTGGGCTGGTGACCAAGCTGTTGCAGGAAATCAAGGAAGGGCAGAGTGTGGATTGTGGAGTTCATGACTGGAACAATGTAATCCACTTTTTTTGCAAGAAGAGATTGATGCAAGATGCAGAAAAAGCTCTAAAGAAGATGAGAAGCTTAGGTCACTTGCCAAATGCGCAAACTTTCCATTCTATGGTCACCGGGTATGCTGCCATTGGAGGGAATTATCAAGAGGTGACAGAACTGTCGGGTGAGATGAAAGCTCTTGCTTCTTCTATATCCATGAAGTTTGATCAGGAACTTCTCGATTCCGTGCTGTATACGTTTGTGAGGGGCGGATTCTTCACTCGAGCCAATGAAGTTGTGACGATGATGGAAAAAGGAAAAATGTTTGTTGACAAGTACAAGTATCGAATGCTATTCTTGAAATACCATAAATCACTTTACAAAGGAAAGGCTCCGAAATTTCAGACAGAATCCCAACTAAACAAAAGGGAAGCAGCCCTGGCTTTTAAAAGGTGGATAGGCTTGAATTGA 1917 0.409 MEGFPRKSVISKLVTSYVDSLDIQYLEKAYELVECAIEEGKQVLLEKEVLIYVSFGLAKARLPVPSSTVLRKMIAIEHFTPVTAWSAVLAHMSQTAEGSYLAAELILEIGYLFQNNRVDLRKKSNAPLIAMKPNAAAFNIALAGCLLFETSRKAEELLDMMPRIGVKADANLLIIMARVYERNGQREELKKLQRHMEEAPNLNDLEFRQFYNCLLTCHLKFRDLDSASNMVLEMLRKAKEARNSLAAAKFMTNAAEIDHSHSPGLASVHSLNNSKDLYSLQNNRPITNAVLSYEEFSKDRNFLKLESESKAILSSLLAKLQMQVNLITTKHEREDSPFSNDNSALVHVINACISLGWLDQAHDLLEEMRLAGVRTGSSVYSSLLKAYCRANRAADVTSLLRDAKIAGIQLDSSSYEAMIQSRVLQQDTQGALQLFKERKEARIPKVTQQNSGLMAKSGTETDEAGLVTKLLQEIKEGQSVDCGVHDWNNVIHFFCKKRLMQDAEKALKKMRSLGHLPNAQTFHSMVTGYAAIGGNYQEVTELSGEMKALASSISMKFDQELLDSVLYTFVRGGFFTRANEVVTMMEKGKMFVDKYKYRMLFLKYHKSLYKGKAPKFQTESQLNKREAALAFKRWIGLN 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01438 638 Gene3D Tetratricopeptide repeat domain 320 453 IPR011990 GO:0005515
Gma03g01438 638 Gene3D Tetratricopeptide repeat domain 56 284 IPR011990 GO:0005515
Gma03g01438 638 Gene3D Tetratricopeptide repeat domain 454 635 IPR011990 GO:0005515
Gma03g01438 638 Pfam PPR repeat 348 373 IPR002885 -
Gma03g01438 638 Pfam PPR repeat 211 237 IPR002885 -
Gma03g01438 638 Pfam Pentatricopeptide repeat domain 398 443 IPR002885 -
Gma03g01438 638 PANTHER OS10G0422566 PROTEIN 331 637 - -
Gma03g01438 638 PANTHER OS10G0422566 PROTEIN 1 331 - -
Gma03g01438 638 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 376 410 IPR002885 -
Gma03g01438 638 Pfam PPR repeat family 485 530 IPR002885 -
Gma03g01438 638 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 483 517 IPR002885 -
Gma03g01438 638 PANTHER BNAC05G43320D PROTEIN 331 637 - -
Gma03g01438 638 PANTHER BNAC05G43320D PROTEIN 1 331 - -
Gma03g01438 638 TIGRFAM PPR: pentatricopeptide repeat domain 487 519 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01438 Gma-Chr3 40582677 40584692 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01438 379 607 Miscellaneous Gene Families AT4G11690 19.828 1.51e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01438 - - gmx:100809665 1209.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g01438 03 40582677 40584692 Gma03g01438 03 40582677 40584692 ECH
Gma19g01495 19 44289739 44290869 Gma03g01438 03 40582677 40584692 GST