Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01362 ATGAAAAAATCGTTTCTCGTTCCCCATTCTCTACTTTCTACCCCAAAACCCCAACCGCGGCATCATCTTCGACACCATAAACCACCATCCTCTGCGTCGGTTTCCACAAACCAAACCAAATGGAACTCCAAAACCAACGTGATAATCACACACCCAACCCTTGTGGTAATGGAATCATGTTCCTCCATGCACCAACTGCGTCAGATTCAAGCACGCATGACTCTCACCGGCCTCATCAACGACACCTTCCCCCTCAGCAGAGTCCTCGCTTTCTGCGCCCTCGCCGACGCCGGCGACATCCGCTACGCCCATCGTCTCTTCCGCCGTATACCCGAACCCAACACCTTCATGTGGTACACCATGATCCGAGGCTACAACAAAGCGCGAATTCCCTCCACGGCATTCTCCTTCTTTCTCCACATGCTTCGAGGACGCGTTCCCTTGGACGCAAGAACCTTCGTTTTCGCGCTCAAGGCCTGCGAGCTCTTCTCGGAGCCCTCCCAGGGGGAATCCGTGCATTCCGTTGCTCGGAAAACGGGGTTTGATTCTGAGTTGCTTGTGCGAAATGGGTTGGTGAACTTTTATGCTGATCGTGGTTGGTTGAAGCACGCGCGCTGGGTGTTTGATGAAATGTCTGCTATGGATGTTGTTACTTGGACCACGATGATTGATGGGTATGCGGCGTCTAACTGTTCAGATGCGGCTATGGAGATGTTTAATTTGATGTTGGACGGTGATGTTGAGCCCAATGAGGTCACGTTGATTGCGGTGCTTTCGGCTTGCTCTCAGAAGGGTGACCTTGGTATGGGGAAATACATTCATGAGATTATGGAGAAGAAGAATATGAGGTGGGGTTTGAGTTTACACAATGCCTTGTTGGATATGTATGTGAAATGTGGTAGTTTGATTGCTGCTAGGGAGCTTTTTGACAGAATGGAAACTAGGGATGTAATTTCGTGGACTAGCATGGTTAATGGGTATGCTAAAAGCGGTTACTTGGAGTCTGCAAGGAGGTTTTTCGATCAAACTCCTCGGAAAAATGTGGTCTGCTGGAGTGCGATGATTGCGGGGTATTCTCAGAATGACAAACCTGAGGAATCATTAAAATTGTTTCACGAAATGCTTGGGGCAGGTTTTGTTCCGGTTGAGCACACCTTAGTGAGTGTGCTCTCTGCTTGTGGCCAGCTGAGTTGCTTGAGTTTGGGTTGCTGGATTCATCAATATTTTGTTGATGGAAAAATAATGCCACTTAGTGCTACTTTGGCAAATGCCATTATAGATATGTATGCCAAATGTGGAAACATAGATAAAGCTGCAGAAGTCTTCAGTACAATGTCGGAGAGAAACTTGGTTTCTTGGAATTCTATGATTGCAGGGTATGCTGCCAATGGTCAAGCAAAGCAAGCTGTTGAAGTTTTTGATCAGATGAGGTGTATGGAATTCAACCCGGATGATATTACGTTTGTTAGTTTGTTGACAGCTTGCAGTCATGGTGGTTTGGTTTCAGAAGGTCAAGAATACTTTGATGCCATGGAAAGAAACTATGGAATAAAACCCAAAAAGGAACATTATGCTTGCATGATTGATCTACTAGGTAGAACTGGGCTCCTGGAAGAAGCTTACAAGTTGATAACAAACATGCCAATGCAACCTTGTGAGGCAGCTTGGGGTGCCCTTCTAAGTGCTTGTAGAATGCACGGTAATGTTGAGCTGGCCAGATTGTCTGCTCTTAATCTTCTAAGCTTGGATCCAGAAGACAGTGGCATTTATGTGCAGCTGGCAAATATTTGTGCTAATGAGAGAAAATGGGGTGATGTAAGGAGGGTGCGGAGTTTGATGAGAGACAAGGGTGTGAAGAAGACTCCTGGTCATAGCTTAATAGAGATAGATGGTGAATTTAAAGAGTTTTTGGTGGCAGATGAATCACACACCCAATCTGAGGAGATCTATAAAGTACTGGATGCAATATTTTTGTTGTCAAAATTGGAAGACTGTGACTGCATAGAGCTATTAGCTTCTTTCACAGGTTCTACTGGATATGGATTGTTAACATGGGCCAATGGAGTTATATCGGTTCAGACAATTAAGTACAGACTGTGCAGAAGTGTTTACTTGGCAACTGGCTTCGTGCAAGGTGAATTTGCTTCAAAGTGTCTTATTCGTTTAACTGGATAA 2175 0.4538 MKKSFLVPHSLLSTPKPQPRHHLRHHKPPSSASVSTNQTKWNSKTNVIITHPTLVVMESCSSMHQLRQIQARMTLTGLINDTFPLSRVLAFCALADAGDIRYAHRLFRRIPEPNTFMWYTMIRGYNKARIPSTAFSFFLHMLRGRVPLDARTFVFALKACELFSEPSQGESVHSVARKTGFDSELLVRNGLVNFYADRGWLKHARWVFDEMSAMDVVTWTTMIDGYAASNCSDAAMEMFNLMLDGDVEPNEVTLIAVLSACSQKGDLGMGKYIHEIMEKKNMRWGLSLHNALLDMYVKCGSLIAARELFDRMETRDVISWTSMVNGYAKSGYLESARRFFDQTPRKNVVCWSAMIAGYSQNDKPEESLKLFHEMLGAGFVPVEHTLVSVLSACGQLSCLSLGCWIHQYFVDGKIMPLSATLANAIIDMYAKCGNIDKAAEVFSTMSERNLVSWNSMIAGYAANGQAKQAVEVFDQMRCMEFNPDDITFVSLLTACSHGGLVSEGQEYFDAMERNYGIKPKKEHYACMIDLLGRTGLLEEAYKLITNMPMQPCEAAWGALLSACRMHGNVELARLSALNLLSLDPEDSGIYVQLANICANERKWGDVRRVRSLMRDKGVKKTPGHSLIEIDGEFKEFLVADESHTQSEEIYKVLDAIFLLSKLEDCDCIELLASFTGSTGYGLLTWANGVISVQTIKYRLCRSVYLATGFVQGEFASKCLIRLTG 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01362 724 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 299 664 - -
Gma03g01362 724 Gene3D Tetratricopeptide repeat domain 36 164 IPR011990 GO:0005515
Gma03g01362 724 Gene3D Tetratricopeptide repeat domain 422 650 IPR011990 GO:0005515
Gma03g01362 724 Pfam PPR repeat family 215 261 IPR002885 -
Gma03g01362 724 Pfam PPR repeat family 449 496 IPR002885 -
Gma03g01362 724 Pfam PPR repeat family 346 393 IPR002885 -
Gma03g01362 724 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 316 346 IPR002885 -
Gma03g01362 724 MobiDBLite consensus disorder prediction 1 38 - -
Gma03g01362 724 TIGRFAM PPR: pentatricopeptide repeat domain 217 251 IPR002885 -
Gma03g01362 724 TIGRFAM PPR: pentatricopeptide repeat domain 349 381 IPR002885 -
Gma03g01362 724 TIGRFAM PPR: pentatricopeptide repeat domain 451 484 IPR002885 -
Gma03g01362 724 TIGRFAM PPR: pentatricopeptide repeat domain 289 317 IPR002885 -
Gma03g01362 724 TIGRFAM PPR: pentatricopeptide repeat domain 318 347 IPR002885 -
Gma03g01362 724 TIGRFAM PPR: pentatricopeptide repeat domain 423 450 IPR002885 -
Gma03g01362 724 Pfam PPR repeat 289 316 IPR002885 -
Gma03g01362 724 Pfam PPR repeat 524 547 IPR002885 -
Gma03g01362 724 Pfam PPR repeat 189 213 IPR002885 -
Gma03g01362 724 Pfam PPR repeat 116 143 IPR002885 -
Gma03g01362 724 Gene3D Tetratricopeptide repeat domain 165 315 IPR011990 GO:0005515
Gma03g01362 724 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 215 249 IPR002885 -
Gma03g01362 724 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 95 280 - -
Gma03g01362 724 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 195 326 - -
Gma03g01362 724 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 50 217 - -
Gma03g01362 724 Gene3D Tetratricopeptide repeat domain 342 407 IPR011990 GO:0005515
Gma03g01362 724 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 449 483 IPR002885 -
Gma03g01362 724 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 418 448 IPR002885 -
Gma03g01362 724 Pfam E motif 566 628 IPR046848 -
Gma03g01362 724 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 95 280 - -
Gma03g01362 724 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 195 326 - -
Gma03g01362 724 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 50 217 - -
Gma03g01362 724 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 299 664 - -
Gma03g01362 724 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 347 381 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01362 Gma-Chr3 39799822 39802597 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01362 71 665 Glycoside Hydrolase AT3G49170 33.223 1.43e-98 321
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01362 - - gmx:100790541 1350.11