Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01142 ATGGCCAAAGGCGTAATCTCGGATGAAGAAGACGACGTCGAACTCGACGAGGAAGAGAGGGAACCCGTCGACGGTGACGAATTGGAAGAGGGTCGCGAGGACAACGAAGACGAGGACGAAGAAGAGGAAGGGCAGGATGAATATGAAAATGATGGGTTTATAGTGGACGACATTGAGGACGAAGAGGAGCAGGATGAAGAAGAAGAGAGAGCAGAAAGTGATGAGGAGCGACCGAAGAAGAAAAAGAGGAAGAAAAAGGAGGAGTATGTCCTTGATGAAGATGATTATGAATTGCTGGAGGACAATAATATCAATATCCATCGTCGGAAGGAGAGCAAAAAGTTCAAGCGGCTGAAAAAAGGCAGGAGGGATATTGAGGAGGAGCCCTCTGGGCTTTCTGATGAGGAGGAGCTTGTTGGAAGTGGTAAAGCTGGGCGAACTGCTGAGGAGAAGCTTAAACGCAGTTTATTTGGTGATGATGAAGGAGCTCCACTTGAAGACATTGCTGAAGAGGAGGAGCAAGGAGAAGAGGAAGAGGATGCTGACATTGGAGAAGATGATGAAATGGCTGACTTCATTGTGGATGAAGAAGAAGTTGATGAGAATGGGGCTCCTATGAGGCAGAGGAAGCTGAAGAAAAAGAAAACTAGGCAGGCTCCTGGAGTCTCTTCTTCAGCTCTACAAGAAGCTCAAGAATTATTTGGTGATCCAGATGAGTTGATTCTGAATCGCCAGAAAAATCTAGAAATGAGTGAATTTAGAGAGACTAGACTTGAAGATGAATTTGAGCCTATTGTTCTTTCTGAGAAATATATGACAGAGAAGGATGACTGGATTAGGGAGCTTGATATTCCTGAGAGAATGCAGGTATCTGATGAAAGTACTGGTACTCCTCCGGTGGATGCAAGTAGTATAGATGAAGAGAGTCAATGGATTTGTAAGCAACTTAAAAATGGAACAATTCCTTGGATTCCCAAGAAGATTTCAAACTCCCAGAATAATGAAGAGGATGACCTACCAGTTGACAAGGATGATATTATCAGATTTTTGGAACTGCATCATGTGCAAAAGTTAGATATTCCTTTTATTGCTATGTATCGGAAGGAGGACTGCTTAAGCCTATTAAAAGACCTAGAGCACCCTGAAGCTGGTGATGATAATTGGGATAAGAATGACAAGACACCTACTCTGAAATGGCACAAGGTACTTTGGGCTCTTCAGGACTTGGACAAGAAGTGGTTGCTTCTTCAGAAGCGGAAGAGTGCCCTCCAGTCATACTATAATAAACGGTTTGAAGAAGAGTCCCGTCGTGTGTATGATGAAACAAGACTAAACTTGAATCGTCAATTGTTTGAATCAGTTATGAGATCGCTGAAGGAAGCAGGATCTGAGAGGGAGGTTGATGATGTTGACTCCAAGTTCAACTTGCATTTCCCACCTGGCGAAGCTGGTGTTGATGAAGGACAATACAAGAGGCCAAAAAGGAAGTCAATGTATAGCACTTTCAGTAAGGCTGGTCTTTGGGAGGTTGCAAGCAGGTTTGGGTGTAGTCCTGAGCAACTTGGATTATGCCTAACTGAAGTTAACCTGCAAGAGTTGGAAGATCCAAAGGAAACACCAGAAGAGATGGCTTCTAACTTTACATGTGCTATGTATGATACCCCTGAAGAAGTACTTAAATGTGCCAGGCACATGGCTGCTGTTGAGATAAGTTGTGAGCCTAGCATTAGGAAACATGTTCGCAGCCACTTTCTTGACCATGCAGTTGTGTCAACTTGTCCTACTGCTGATGGAAATACAACAATAGATTCTTTCCATCAGTTTGCTGGGGTGAAGTGGCTGCGGGAGAAGCCTTTGTCTAAGTTTGAAGATGTGCAATGGCTCCTTATACACAAGGCAGAAGAGGAGAAACTCATTCAAGTTACTATTAAACTGCCTGAGCAGTATCTTAATAAGTTAATAGACCAATTCAATGAATATTATATTAGTGACAGTGTTAGCAGATCTGCTCAGCTGTGGAATGATCAGAGGAAGTTGATACTGCATGATGCCATTTTTCGATTCCTTTTACCGTCAATGGAAAAAGAGGCAAGAGGTGTCCTGGCAAGTAAAGCCAAGAATTGGTTACTTATGGAATATGGGAAGGCCTTATGGACTAAGGTTGCCGTGGGACCTTACCAACAGAAGGAAAATGATCTTGGCTCAGATGATGAGGCTGCTCCTCGAGTTATGGCATGCTGTTGGGGCCCTGGAAAGCCGCTAACAACTTTTGTCATGTTAGATTCATCGGGTGAAGTGCTTGATGTTCTTTACACTGGGTCACTTACTTTTAGGTCCCAGAATGTTAATGACCAACAACGGAAGAAGAATGACCAGGAACGGGTGTTAAAGTTTATGACCGATCACCAACCGCATGTTGTTGTTTTAGGAGCAGTTAACTTGTCTTGCACCCGTTTGAAGGAAGATATATACGAGGTCATTTTTAAGATGGTGGAGGAAAATCCTAGAGATGTTGGGCACGAAATGGATGGGCTCAGCATTGTCTATGGAGATGAATCTCTTCCTCGTCTTTATGAAAATTCTCGAATTTCCTCTGAACAACTTCCTTCACAACAAGGTATAGTGAGGCGAGCAGTTGCTCTTGGACGTTATCTCCAGAACCCATTGGCAATGGTTGCAACATTATGTGGACCTAGAAAGGAAATATTGTCATGGAAACTGAGCCCTTTGGAGAGTTTTCTCAACCCAGATGATAAATTTGCAATGGTTGAGCAGATTATGGTAGATGTGACCAATCAGGTTGGCTTAGACATTAATTTAGCAATAAGTCATGAATGGTTATTTGCTCCATTACAATTTATTTCTGGGCTTGGTCCACGGAAGGCTGCATCCTTACAGAGATCCCTTGTAAGAGCTGGTGCAATTTTTACTCGGAAGGACTTTCTGACTGAACATAAACTTGGTAAAAAGGTGTTTGTCAATGCGGTTGGTTTCTTGCGTGTCCGGCGAAGTGGTTTAGCTGCTAGCAGCAGCCAATTTATCGATTTGCTGGATGATACAAGAATTCATCCTGAATCTTATATTCTTGCACAAGAGTTGGCCAAAGATGTGTATGAAGAAGATGGCACAGGTGATGCAAATGATGATGATGATGCACTGGAGATGGCCATAGAGCATGTGAGAGACCGACCTAGTTATTTGAAAAACCTTGATGTTGAGGAATATGCTTCTGGGAAAAAACGTCAGAACAAAATACAAACTTTCTATGACATAAAAAGAGAATTGATTCAAGGTTTTCAGGATTGGCGTAAGCAATATGAAGAACCAAGTCAAGATGAGGAATTCTATATGATTTCAGGTGAGACTGAAGAGACCCTTGCTGAAGGCAAAATCGTTCAAGTCACAGTTCGGAGAGTGCAAGCCCAGAAAGCAATATGTGGGCTTGAATCTGGAATGACCGGAATCCTCTTGAAAGAAGACTATACAGATGACTGGAGAGATGTAATTGAATTGTCTGATAGGCTACATGAAGGTGACATGCTCACTTGTAAAATTAAGTCAATTCAAAAGAATAGGTATCAAGTCTTCCTTGTATGTAAGGATAGTGAAATGAGAAGTAATCGGTTACAGAATAACCGTGATATTGACCCTTATTACCATGAGGACCGGAGCTGTTTTCAGAGTGATCAAGACAAAGCTCGGAAAGAAAAGGAGCTTGCAAAGAAGCATTTCAAGCCAAGGATGATTGTTCATCCACGCTTTCAGAACATAACTGCCGATGAAGCAATGGAGTTCTTGTCTGACAAAGATCCTGGAGAAAGTATTATCCGTCCTAGTTCACGAGGACCTTCATATCTTACTTTAACTCTTAAAATTAATGATGGAGTATATGCCCATAAGGATATAGTTGAAGGTGGGAAGGAACACAAGGACATAACAAGCTTACTCCGAATCGGGAAGACACTAAAAATTGGAGAGGACACTTTTGAGGACTTAGATGAGGTTATGGACCGCTATGTTGATCCCTTGGTGGCTCACTTAAAGTCAATGTTAAACTATCGCAAATTCCGAAAGGGTACAAAAGCAGAAGTTGATGAACTTTTGAGGATGGAGAAAGCTGAGTATCCTATGCGCATAGTCTATAGTTTTGGCATCTCCCATGAACATCCTGGCACATTTATATTAACTTATATAAGAAGTACAAATCCACACCATGAGTACATTGGGCTTTACCCAAAAGGATTCAGGTTTAGGAAAAAGATGTTTGAGGACATTGATAGGCTTGTAGCATATTTTCAGAGACATATTGATGATCCCCAGCATGATTCAGCCCCTTCCATTAGATCTGTTGCTGCTATGGTACCAATGCGAAGCCCTGCAGCTGGTGGCTCATCAGGGGCATCTGTGGGTAGTGGCTGGGGTGGTGGCTCAAACAGTGAGGGTGGTGGCTGGAGAGGTCACTCTTATGATAGGGGGGATCGATCATCTACACCTGGTTCCAGGACAGGACGGGGTGAATACAGAAACAATGGGAATCAGGACGAACATCCTAGTGGAGTGCCTCGTCCATATGGTGGTGGAAGAGGGCGTGGACGTGGTCGTGGTCGAGGTTCTTATAACAATAGAGGAGACAACTCCAATAATGAAAGGCAGGACTCTGGTTATGGGGGCAGATGGGGTTCTAATAATACAAAGGATTCGGATGATGGTTTAAGCAATTTTCCAGGGGCCAAGGTTCAGAATTCTCCTGGAAGGGAAGCTTTTCCTGGTGGTTGGGGTGGTGGTGGTGGAAGCGGTGGAGGTGGAGCTAGTAACAGTGACAATGGTGGCTGGGGGGGACAAGCGAGTGGTGGTGCTGGTCCAAGTGATGGTGAACAAGGAAGCTCTGGCTGGGGATCTGCCCCCAAGAAAGCAGCATCAGGGAACGGATGGGGATCTGGAAATTCTGGCGGCCGTGGTTGGTGA 4965 0.4361 MAKGVISDEEDDVELDEEEREPVDGDELEEGREDNEDEDEEEEGQDEYENDGFIVDDIEDEEEQDEEEERAESDEERPKKKKRKKKEEYVLDEDDYELLEDNNINIHRRKESKKFKRLKKGRRDIEEEPSGLSDEEELVGSGKAGRTAEEKLKRSLFGDDEGAPLEDIAEEEEQGEEEEDADIGEDDEMADFIVDEEEVDENGAPMRQRKLKKKKTRQAPGVSSSALQEAQELFGDPDELILNRQKNLEMSEFRETRLEDEFEPIVLSEKYMTEKDDWIRELDIPERMQVSDESTGTPPVDASSIDEESQWICKQLKNGTIPWIPKKISNSQNNEEDDLPVDKDDIIRFLELHHVQKLDIPFIAMYRKEDCLSLLKDLEHPEAGDDNWDKNDKTPTLKWHKVLWALQDLDKKWLLLQKRKSALQSYYNKRFEEESRRVYDETRLNLNRQLFESVMRSLKEAGSEREVDDVDSKFNLHFPPGEAGVDEGQYKRPKRKSMYSTFSKAGLWEVASRFGCSPEQLGLCLTEVNLQELEDPKETPEEMASNFTCAMYDTPEEVLKCARHMAAVEISCEPSIRKHVRSHFLDHAVVSTCPTADGNTTIDSFHQFAGVKWLREKPLSKFEDVQWLLIHKAEEEKLIQVTIKLPEQYLNKLIDQFNEYYISDSVSRSAQLWNDQRKLILHDAIFRFLLPSMEKEARGVLASKAKNWLLMEYGKALWTKVAVGPYQQKENDLGSDDEAAPRVMACCWGPGKPLTTFVMLDSSGEVLDVLYTGSLTFRSQNVNDQQRKKNDQERVLKFMTDHQPHVVVLGAVNLSCTRLKEDIYEVIFKMVEENPRDVGHEMDGLSIVYGDESLPRLYENSRISSEQLPSQQGIVRRAVALGRYLQNPLAMVATLCGPRKEILSWKLSPLESFLNPDDKFAMVEQIMVDVTNQVGLDINLAISHEWLFAPLQFISGLGPRKAASLQRSLVRAGAIFTRKDFLTEHKLGKKVFVNAVGFLRVRRSGLAASSSQFIDLLDDTRIHPESYILAQELAKDVYEEDGTGDANDDDDALEMAIEHVRDRPSYLKNLDVEEYASGKKRQNKIQTFYDIKRELIQGFQDWRKQYEEPSQDEEFYMISGETEETLAEGKIVQVTVRRVQAQKAICGLESGMTGILLKEDYTDDWRDVIELSDRLHEGDMLTCKIKSIQKNRYQVFLVCKDSEMRSNRLQNNRDIDPYYHEDRSCFQSDQDKARKEKELAKKHFKPRMIVHPRFQNITADEAMEFLSDKDPGESIIRPSSRGPSYLTLTLKINDGVYAHKDIVEGGKEHKDITSLLRIGKTLKIGEDTFEDLDEVMDRYVDPLVAHLKSMLNYRKFRKGTKAEVDELLRMEKAEYPMRIVYSFGISHEHPGTFILTYIRSTNPHHEYIGLYPKGFRFRKKMFEDIDRLVAYFQRHIDDPQHDSAPSIRSVAAMVPMRSPAAGGSSGASVGSGWGGGSNSEGGGWRGHSYDRGDRSSTPGSRTGRGEYRNNGNQDEHPSGVPRPYGGGRGRGRGRGRGSYNNRGDNSNNERQDSGYGGRWGSNNTKDSDDGLSNFPGAKVQNSPGREAFPGGWGGGGGSGGGGASNSDNGGWGGQASGGAGPSDGEQGSSGWGSAPKKAASGNGWGSGNSGGRGW 1654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01142 1654 SUPERFAMILY Ribonuclease H-like 741 896 IPR012337 -
Gma03g01142 1654 MobiDBLite consensus disorder prediction 1621 1635 - -
Gma03g01142 1654 SUPERFAMILY SH2 domain 1254 1340 IPR036860 -
Gma03g01142 1654 SMART rnase_8s 741 859 IPR006641 GO:0006139
Gma03g01142 1654 SUPERFAMILY Nucleic acid-binding proteins 1124 1204 IPR012340 -
Gma03g01142 1654 MobiDBLite consensus disorder prediction 1495 1516 - -
Gma03g01142 1654 Pfam Acidic N-terminal SPT6 34 124 IPR028083 -
Gma03g01142 1654 PIRSF Spt6 3 1507 IPR017072 GO:0032968
Gma03g01142 1654 MobiDBLite consensus disorder prediction 1458 1654 - -
Gma03g01142 1654 MobiDBLite consensus disorder prediction 163 199 - -
Gma03g01142 1654 CDD SH2_Cterm_SPT6_like 1349 1436 IPR035018 -
Gma03g01142 1654 ProSiteProfiles S1 domain profile. 1129 1200 IPR003029 GO:0003676
Gma03g01142 1654 CDD SH2_Nterm_SPT6_like 1251 1339 IPR035019 -
Gma03g01142 1654 Pfam SH2 domain 1218 1435 IPR035420 -
Gma03g01142 1654 Gene3D SH2 domain 1237 1348 IPR036860 -
Gma03g01142 1654 MobiDBLite consensus disorder prediction 139 161 - -
Gma03g01142 1654 Gene3D - 1122 1210 IPR012340 -
Gma03g01142 1654 PANTHER TRANSCRIPTION ELONGATION FACTOR SPT6 85 1651 - -
Gma03g01142 1654 SMART S1_6 1127 1200 IPR022967 -
Gma03g01142 1654 Pfam Holliday-junction resolvase-like of SPT6 740 896 IPR028231 -
Gma03g01142 1654 MobiDBLite consensus disorder prediction 1539 1579 - -
Gma03g01142 1654 MobiDBLite consensus disorder prediction 73 92 - -
Gma03g01142 1654 Gene3D - 294 497 IPR023319 -
Gma03g01142 1654 Gene3D - 498 934 IPR023323 -
Gma03g01142 1654 Gene3D - 731 1121 IPR037027 GO:0006139
Gma03g01142 1654 Gene3D - 1010 1102 IPR042066 -
Gma03g01142 1654 Gene3D SH2 domain 1349 1445 IPR036860 -
Gma03g01142 1654 SUPERFAMILY RuvA domain 2-like 912 1002 IPR010994 -
Gma03g01142 1654 Coils Coil 55 75 - -
Gma03g01142 1654 Pfam HHH domain 1016 1103 IPR041692 -
Gma03g01142 1654 Gene3D - 262 1004 - -
Gma03g01142 1654 SUPERFAMILY Tex N-terminal region-like 337 719 - -
Gma03g01142 1654 Pfam Helix-hairpin-helix motif 900 1001 IPR032706 -
Gma03g01142 1654 SUPERFAMILY RuvA domain 2-like 1015 1104 IPR010994 -
Gma03g01142 1654 MobiDBLite consensus disorder prediction 9 72 - -
Gma03g01142 1654 MobiDBLite consensus disorder prediction 1 231 - -
Gma03g01142 1654 PANTHER TRANSCRIPTION ELONGATION FACTOR SPT6 85 1651 IPR017072 GO:0032968
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01142 Gma-Chr3 36682464 36691676 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01142 K11292 - gmx:100808591 2998.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g01142 03 36682464 36691676 Gma03g01142 03 36682464 36691676 ECH
Gma19g01204 19 40748202 40756061 Gma03g01142 03 36682464 36691676 GST