Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01025 ATGGAAGCGCTAAAACTGTGCAATCTAACATGGAGCCCGTTGAAGCACTTCTTTCACTCTCACGCATTTCGTCGAACACCTCCCGTGCTCGTTCTTCGCGCGTGCTCTTCTTCCACCGCCGCCGCCGACACCAGGGCCGCCGGTCGCGGACGCCGGAGCTCGGAGTCGTCGTCCACCACTTCGACTTCCGATAGGGACGCCATTCGAGCCATTCGCTTGAAGAAGGTTGAAGAATTGAGAAGCAAGGGGCTTGATCCGTATGCTTATGAATGGAACAAAACTCACGGTGCTAATCAACTGCAAGATATATACAGAGATCTAGGAAATGGTGAGGAAAAAAATAGTGAGAATGACCATGTATCTGTCGCGGGAAGAATTGTTGCTAGGAGGGCATTTGGAAAGCTTGCCTTTCTGACTCTAAGAGATGATTCAGGGACGATTCAGCTCTATTGTGATAAGGAGAGACTCATAGGTGATCAGTTTGAACAGTTAAAGGCCCATGTTGATATTGGTGATATATTAGGTGTAAGAGGAACAATAAAACGAACTGAAAAAGGAGAACTTTCTGTGTCTGTTCTATCTTTTGCAATCCTTACAAAATCTCTGCTTCCACTGCCTGACAAATATCATGGACTAACTGATATAGATAAACGTTATCGTCAGAGGTATGTAGATATGATCGCAAATCCAGAGGTAGCGGATGTATTCCGTAGAAGAGCAAAGGTTGTATCAGAGATACGGAGGACAATGGATTCTTTAGGTTTTGTTGAAGTTGAAACTCCAGTTTTGCAGGGAGCAGCTGGGGGAGCAGAAGCCAGACCATTTATTACATACCATAATTCTCTTGGAAGAGACTTATATCTGAGAATTGCAACTGAATTACATCTTAAGAGAATGCTGgtgggtggttttgaaaaagtatacgagattggtcgaatatttagaaatgaaggaatttcaactcgacataatcctgaatttacaactatagagatgtacgaagcatactcggattatcaaagcatgatgaatttagcagaggagatcgttactcgatgtgctcttgcagttcatgggaagcttaccattgattatcagggagtcgagatatgtctggaaaagccctggaggagggagactatgcacaatcttgttaaagaaactgctgggattgatttcaatgaattggcaaatgatcttgaggttgcaaagcgagttactctggatacccttggaaagaatcttgataacaaggataaaggttccattgaagcatgccaatccgttggtcacctccttaatgagGTTTTTGAGAGTTTTGTAGAACCAAAGCTCATCCAACCTACATTTGTTTTAGACTATCCAATTGAGATATCTCCACTGGCCAAACCACACAGAAGATCCACAGGTTTGACTGAGAGATTTGAACTCTTCATTTGTGGTCGTGAGTTGGGCAATGCATTCTCTGAATTGACTGATCCTATAGATCAGAGAGGACGCTTAGAAGATCAAATTAGGCAGCATGAAAAGAAGAGAGCAGCTGTTTCAACAAATGACGATAAAAAGGAAGGAACGGAAGATGATGATGATTCATATGAAGTGACTCTTGATGATGACTTTCTCACAGCTTTGGAATACGGAATGCCTCCAGCTTCTGGAATGGGACTTGGAATTGATAGGCTGGTGATGCTTTTGACAAATTCTCCCAGCATTCGAGATGTTATTCCCTTCCCAGTACTCAAGGTCCAGCAATAG 1755 0.3362 MEALKLCNLTWSPLKHFFHSHAFRRTPPVLVLRACSSSTAAADTRAAGRGRRSSESSSTTSTSDRDAIRAIRLKKVEELRSKGLDPYAYEWNKTHGANQLQDIYRDLGNGEEKNSENDHVSVAGRIVARRAFGKLAFLTLRDDSGTIQLYCDKERLIGDQFEQLKAHVDIGDILGVRGTIKRTEKGELSVSVLSFAILTKSLLPLPDKYHGLTDIDKRYRQRYVDMIANPEVADVFRRRAKVVSEIRRTMDSLGFVEVETPVLQGAAGGAEARPFITYHNSLGRDLYLRIATELHLKRMLVGGFEKVYEIGRIFRNEGISTRHNPEFTTIEMYEAYSDYQSMMNLAEEIVTRCALAVHGKLTIDYQGVEICLEKPWRRETMHNLVKETAGIDFNELANDLEVAKRVTLDTLGKNLDNKDKGSIEACQSVGHLLNEVFESFVEPKLIQPTFVLDYPIEISPLAKPHRRSTGLTERFELFICGRELGNAFSELTDPIDQRGRLEDQIRQHEKKRAAVSTNDDKKEGTEDDDDSYEVTLDDDFLTALEYGMPPASGMGLGIDRLVMLLTNSPSIRDVIPFPVLKVQQ 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01025 584 Hamap Lysine--tRNA ligase [lysS]. 71 583 IPR002313 GO:0004824|GO:0005524|GO:0006430
Gma03g01025 584 SUPERFAMILY Nucleic acid-binding proteins 65 207 IPR012340 -
Gma03g01025 584 PANTHER LYSINE--TRNA LIGASE 52 584 - -
Gma03g01025 584 TIGRFAM lysS_bact: lysine--tRNA ligase 70 582 IPR002313 GO:0004824|GO:0005524|GO:0006430
Gma03g01025 584 SUPERFAMILY Class II aaRS and biotin synthetases 214 580 IPR045864 -
Gma03g01025 584 Gene3D Bira Bifunctional Protein; Domain 2 210 584 IPR045864 -
Gma03g01025 584 MobiDBLite consensus disorder prediction 42 65 - -
Gma03g01025 584 MobiDBLite consensus disorder prediction 504 522 - -
Gma03g01025 584 MobiDBLite consensus disorder prediction 504 532 - -
Gma03g01025 584 PANTHER LYSYL-TRNA SYNTHETASE 52 584 - -
Gma03g01025 584 Coils Coil 498 518 - -
Gma03g01025 584 MobiDBLite consensus disorder prediction 51 65 - -
Gma03g01025 584 Pfam tRNA synthetases class II (D, K and N) 216 580 IPR004364 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Gma03g01025 584 PRINTS Lysyl-tRNA synthetase signature 251 261 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Gma03g01025 584 PRINTS Lysyl-tRNA synthetase signature 267 283 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Gma03g01025 584 PRINTS Lysyl-tRNA synthetase signature 296 309 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Gma03g01025 584 PRINTS Lysyl-tRNA synthetase signature 314 331 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Gma03g01025 584 PRINTS Lysyl-tRNA synthetase signature 447 463 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Gma03g01025 584 CDD LysRS_N 119 226 IPR044136 GO:0000166
Gma03g01025 584 CDD LysRS_core 229 581 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Gma03g01025 584 Pfam OB-fold nucleic acid binding domain 120 195 IPR004365 GO:0003676
Gma03g01025 584 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 236 576 IPR006195 -
Gma03g01025 584 Gene3D - 58 209 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01025 Gma-Chr3 34297803 34307994 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01025 K04567 - gmx:100787720 1105.12