Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g00488 ATGGCCGTCGTTGGCGTCCTCGCGCTGCAAGGATCTTTCAACGAACACATAGCTGCTCTTAGAAGGTTAGGGGTGCAAGGCGTGGAGATTCGAAAGCCAGAGCAGCTTAACACAATTAGTTCCCTCATTATCCCTGGTGGAGAAAGCACCACCATGGCTAAGCTCGCCGAGTATCACAACCTGTTTCCTGCTTTGCGAGAGTTTGTACAAATGGGAAAGCCTGTTTGGGGAACCTGTGCAGGGCTTATATTCTTGGCAAATAAAGCTATAGGACAGAAGACTGGTGGTCAATATTTGGTTGGTGGACTTGATTGTACAGTGCATAGAAATTTCTTTGGCAGCCAGATTCAAAGCTTTGAGGCAGAGCTTTCAGTGCCGGAGCTTGTCTCCAAGGAAGGAGGTCCTGAAACATTTTGTGGAATTTTTATTCGTGCCCCTGCAATTCTTGAAGCAGGGCCAGAAGTTCAAGTGCTGGCTGATTATCCTGTACCTTCTAGCAGATTGTTGAGTTCTGATTCCTCTATTGAAGACCAAACGGAGAATGCTGAGAAAGAAAGTAAAGTTATAGTTGCTGTGAGACAAGGGAACATATTAGCCACTGCTTTCCATCCTGAATTGACAGCCGATACTCGATGGCATAGTTATTTCGTAAAAATGTCAAATGAAATTAGAGAAGAGGCCTCTTCGAGTAGCCTTGTTCCTGCACAAGTCAGTAGTACAAGTCAATATCAACAGCCCCGGAATGACCTTCCTATCTATCGATAG 765 0.4536 MAVVGVLALQGSFNEHIAALRRLGVQGVEIRKPEQLNTISSLIIPGGESTTMAKLAEYHNLFPALREFVQMGKPVWGTCAGLIFLANKAIGQKTGGQYLVGGLDCTVHRNFFGSQIQSFEAELSVPELVSKEGGPETFCGIFIRAPAILEAGPEVQVLADYPVPSSRLLSSDSSIEDQTENAEKESKVIVAVRQGNILATAFHPELTADTRWHSYFVKMSNEIREEASSSSLVPAQVSSTSQYQQPRNDLPIYR 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g00488 254 PANTHER PYRIDOXAL 5'-PHOSPHATE SYNTHASE SUBUNIT SNO 2 253 IPR002161 GO:0004359|GO:0042819|GO:0042823
Gma03g00488 254 PANTHER - 2 253 - -
Gma03g00488 254 MobiDBLite consensus disorder prediction 228 248 - -
Gma03g00488 254 CDD GATase1_PB 4 217 IPR002161 GO:0004359|GO:0042819|GO:0042823
Gma03g00488 254 ProSiteProfiles PdxT/SNO family profile. 3 221 IPR002161 GO:0004359|GO:0042819|GO:0042823
Gma03g00488 254 PIRSF Glut_amidoT_SNO 1 224 IPR002161 GO:0004359|GO:0042819|GO:0042823
Gma03g00488 254 SUPERFAMILY Class I glutamine amidotransferase-like 3 219 IPR029062 -
Gma03g00488 254 Hamap Pyridoxal 5'-phosphate synthase subunit PdxT [pdxT]. 4 219 IPR002161 GO:0004359|GO:0042819|GO:0042823
Gma03g00488 254 Pfam SNO glutamine amidotransferase family 6 220 IPR002161 GO:0004359|GO:0042819|GO:0042823
Gma03g00488 254 ProSitePatterns PdxT/SNO family family signature. 41 51 IPR021196 -
Gma03g00488 254 Gene3D - 1 231 IPR029062 -
Gma03g00488 254 MobiDBLite consensus disorder prediction 228 254 - -
Gma03g00488 254 TIGRFAM PLP_synth_Pdx2: pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2 4 161 IPR002161 GO:0004359|GO:0042819|GO:0042823
Gma03g00488 254 ProSiteProfiles Glutamine amidotransferase type 1 domain profile. 3 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g00488 Gma-Chr3 8801421 8805850 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g00488 K08681 - gmx:100776337 484.952
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g00488 03 8801421 8805850 Gma01g01172 01 41666813 41671507 GST