Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g00193 ATGAACAACTTAGAGCTTGGGAGGCAGATACATGGTTTGACCCAGAAAGTGGGATATGGAACACATGTTTCAGTTTGCAATGTTTTGATGTCAACTTATTCAAAATGTGAGGTCCCTAAAGATGCCAAAGCTGTTTTTGAGTGCATTAGTAATCGGAATGTAGTGTCTTGGACGACAATGATTTCTATTCAAGAAGAAGATGCAGTGTCTCTCTTTAATGCAATGAGAATTAATGGGGCTCTGCTTGACATGTGTGGCAAGCGTGGCGACATAATTGAGTCTCAAAGAGTGTTCAATGAGACACCTGAACGAACCCAGTTTGCTAGGACAGCCATAATATCTCCCTATGCCCGCCATGGAGTCTTTGAGTCAGTGATGAGTTTGTATACAGAAATGGAGAGGGAAGGAATCAATCCTGCCTCCATCACTTTCCTTTCTGTTTTGGCTGCATGTTGTAGAAAGGGCATGATTGATGTCGGTCATAGAGTCTTTGACTCTATGGTGAAGAAACATTCAATTGAGCCAACCTCTGAGCATTATTCTATTATGGTGGACATGTTAGGCCGTGTAGGACGACTAGATGAGGCAGAAGAGTTGATGCACCAGATTCCAGGAGGGCCTGGATTGTCAGTGTTGCAAAGTTTGCTTGGGTCTTGTAGATTACATGGGAATATGGAGATGGCTGAGAAGGTTGTTGGTAGATTGATAGAAATGGATCCTGCAAGTTCAGGTCCATATGTGTTAATGGCAAACTTGTATGCTGAGAAAGGAAAGTGGGAGAAAGTTGCTGAAGTGCGAAGAGGGATGAGAGGGAGGGGAGTAAAGAAGGAAGTTGGATTTAGTTGGGTGGATGTTTCTAATGTTGATTCCTTATATTTGCATGGTTTCTCCTCTGGGGATAAGTCACATCCAGAGTCTGAGAATATTTGTAAAATTGCCGAGTTTCTGGGACTGCAAATGAAAATTTTGAAAGAGAACAGAGAAACGGAAGGAGAGTGGTATCATGAGTAA 1011 0.4243 MNNLELGRQIHGLTQKVGYGTHVSVCNVLMSTYSKCEVPKDAKAVFECISNRNVVSWTTMISIQEEDAVSLFNAMRINGALLDMCGKRGDIIESQRVFNETPERTQFARTAIISPYARHGVFESVMSLYTEMEREGINPASITFLSVLAACCRKGMIDVGHRVFDSMVKKHSIEPTSEHYSIMVDMLGRVGRLDEAEELMHQIPGGPGLSVLQSLLGSCRLHGNMEMAEKVVGRLIEMDPASSGPYVLMANLYAEKGKWEKVAEVRRGMRGRGVKKEVGFSWVDVSNVDSLYLHGFSSGDKSHPESENICKIAEFLGLQMKILKENRETEGEWYHE 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g00193 336 Pfam Pentatricopeptide repeat domain 128 188 IPR002885 -
Gma03g00193 336 Gene3D Tetratricopeptide repeat domain 1 78 IPR011990 GO:0005515
Gma03g00193 336 Pfam E motif 222 284 IPR046848 -
Gma03g00193 336 TIGRFAM PPR: pentatricopeptide repeat domain 180 202 IPR002885 -
Gma03g00193 336 TIGRFAM PPR: pentatricopeptide repeat domain 142 176 IPR002885 -
Gma03g00193 336 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 105 139 IPR002885 -
Gma03g00193 336 PANTHER OS07G0670000 PROTEIN 2 78 - -
Gma03g00193 336 PANTHER OS07G0670000 PROTEIN 115 329 - -
Gma03g00193 336 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 140 175 IPR002885 -
Gma03g00193 336 Gene3D Tetratricopeptide repeat domain 79 302 IPR011990 GO:0005515
Gma03g00193 336 PANTHER OS07G0578800 PROTEIN-RELATED 2 78 IPR045215 GO:0003723|GO:0009451
Gma03g00193 336 PANTHER OS07G0578800 PROTEIN-RELATED 115 329 IPR045215 GO:0003723|GO:0009451
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g00193 Gma-Chr3 2395390 2396795 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g00193 1 309 Glycoside Hydrolase AT3G49170 30.447 8.20e-56 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g00193 - - gmx:102660550 503.056