Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g02003 ATGAGAAGGTTCGCGTGGTTCACGCCGTATCGGCGCCATTTACTTTCGTCTCTGACTTCAGAATCCCTCGTGGATAAAGGAGAATCAACCTTCACCAAATTCTCGTCGTCTCGCCAATCGTTTTTGCTCGCTCGAGCTTTGGTCAATTGCGGGTTCGTCACGAAAACGGAGGAGTCCCGGATTCCGAGAGTACCGTTAAGATATCGTTATTTTCATGCCACAGCATTTTCTTCGTCAGCTGACCGAGACCATTATGGAACTCTTGGTGTTCCTGAAAATGCCAGTCAGGATGAGATAAAGAAGGCATTTCACTCGCTTGCTAAAAAGTACCATCCAGATGCAAATAAGAATAATCCATCTGCTAAGAGGAAATTTCAAGATATAAGAGAAGCTTACGAGACATTGAGAGACTCTAAAAAGAGAGCAGAGTATGACAAGATGCGTACTCGCGGTTCAGAAGACATAGAATATGATCGTGATGATGCAGAAAGGTTTAGAAATGCTTATCGTTCTCATTTTTCTGATTCATTTCATAAAGTATTCTATGAGATATTTGAAGAAGCAACAACTCAATTCTCATCAAATATAGAGGTGGAGTTGTCTCTTACTTTCTCAGAAGCATCGAGAGGATGCACCAAACATGTGTCATTTGATGCATTAGTTCCATGCGATCATTGCAATGGGCAGGGCTATCCACTTGATGCCATCCCAAAAGTTTGTCCAACATGCAGGGGCTCGGGTCGTGTTACAATCCCCCCATTTACGTCAACATGCATTACTTGTAAAGGATCAGGCCGAATCATTAAGGACTCTTGTCTAACATGTGGAGGATCTGGGGCGGTTGAAGGGGTTAAAGAGGTTAAAGTTACAATACCAGCAGGTGTGGATTCAGGAGATACAATCCATGTGCCAGAAGGTGGGAATGCTGCTGGAAGTGGAGGTCGACCTGGAAGTTTATACATTAAAATAAAGGCAATTTTCTTTCCAAATATTCTCACACTAACATATGGTGCAGATATCTATGTGGATTCCAATATTAGCTTTACACAGGCTATTCTTGGGGGCAAAGTTGAAGTGCCTACTTTATCTGGGAAGATGCAGTTAAAAATACCCAAGGGTGTTCAACATGGACAGCTTCTAGTATTAAGAGGCAAAGGACTACCAAAGCATGGATTTCTTGTACATCATGGGGATCAGTATGTACGATTCCGTGTTAACCTTCCCATTGAAATCAATGAACGACAACGTGCTATACTTGAAGAACTTGCAAAGGAGGAAATAAAGGAGGGAAACAACTCTTCATTTGAAGGAAATTGGTGGAAGCAAATTCTTGAACACACGATGGGTCCAAAACCAAATATGATTGCATGGCGGACTAGCCAAACACCAAATATCATTGTGATTGCTACATTCTTCATCCTTGCGAACCATTCAAACAATAAGTTATGGGTAGAGTGGAGCAAGTAG 1467 0.4206 MRRFAWFTPYRRHLLSSLTSESLVDKGESTFTKFSSSRQSFLLARALVNCGFVTKTEESRIPRVPLRYRYFHATAFSSSADRDHYGTLGVPENASQDEIKKAFHSLAKKYHPDANKNNPSAKRKFQDIREAYETLRDSKKRAEYDKMRTRGSEDIEYDRDDAERFRNAYRSHFSDSFHKVFYEIFEEATTQFSSNIEVELSLTFSEASRGCTKHVSFDALVPCDHCNGQGYPLDAIPKVCPTCRGSGRVTIPPFTSTCITCKGSGRIIKDSCLTCGGSGAVEGVKEVKVTIPAGVDSGDTIHVPEGGNAAGSGGRPGSLYIKIKAIFFPNILTLTYGADIYVDSNISFTQAILGGKVEVPTLSGKMQLKIPKGVQHGQLLVLRGKGLPKHGFLVHHGDQYVRFRVNLPIEINERQRAILEELAKEEIKEGNNSSFEGNWWKQILEHTMGPKPNMIAWRTSQTPNIIVIATFFILANHSNNKLWVEWSK 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g02003 488 SUPERFAMILY Chaperone J-domain 79 181 IPR036869 -
Gma02g02003 488 Pfam DnaJ C terminal domain 196 408 IPR002939 -
Gma02g02003 488 SUPERFAMILY HSP40/DnaJ peptide-binding domain 195 326 IPR008971 GO:0006457|GO:0051082
Gma02g02003 488 PRINTS DnaJ domain signature 120 140 IPR001623 -
Gma02g02003 488 PRINTS DnaJ domain signature 85 103 IPR001623 -
Gma02g02003 488 PRINTS DnaJ domain signature 140 159 IPR001623 -
Gma02g02003 488 PRINTS DnaJ domain signature 103 118 IPR001623 -
Gma02g02003 488 CDD DnaJ_zf 223 279 IPR001305 GO:0031072|GO:0051082
Gma02g02003 488 SUPERFAMILY HSP40/DnaJ peptide-binding domain 337 419 IPR008971 GO:0006457|GO:0051082
Gma02g02003 488 SMART dnaj_3 82 140 IPR001623 -
Gma02g02003 488 Gene3D - 334 436 - -
Gma02g02003 488 Gene3D DnaJ domain 80 193 IPR036869 -
Gma02g02003 488 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 210 281 IPR036410 -
Gma02g02003 488 Coils Coil 409 429 - -
Gma02g02003 488 PANTHER CHAPERONE PROTEIN DNAJ 1, MITOCHONDRIAL 31 449 - -
Gma02g02003 488 Pfam DnaJ central domain 223 279 IPR001305 GO:0031072|GO:0051082
Gma02g02003 488 CDD DnaJ_C 194 408 - -
Gma02g02003 488 ProSiteProfiles dnaJ domain profile. 83 148 IPR001623 -
Gma02g02003 488 Hamap Chaperone protein DnaJ [dnaJ]. 80 430 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Gma02g02003 488 Gene3D - 219 252 - -
Gma02g02003 488 Gene3D - 253 287 - -
Gma02g02003 488 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 31 449 - -
Gma02g02003 488 ProSitePatterns Nt-dnaJ domain signature. 125 144 IPR018253 -
Gma02g02003 488 ProSiteProfiles Zinc finger CR-type profile. 210 284 IPR001305 GO:0031072|GO:0051082
Gma02g02003 488 CDD DnaJ 83 137 IPR001623 -
Gma02g02003 488 Pfam DnaJ domain 83 145 IPR001623 -
Gma02g02003 488 Gene3D - 194 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g02003 Gma-Chr2 45484692 45499218 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g02003 83 178 Miscellaneous Gene Families AT1G16680 34.314 3.40e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g02003 - - gmx:100809440 847.425
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma02g02003 02 45484692 45499218 Gma02g02003 02 45484692 45499218 ECH
Gma14g01784 14 48023849 48044413 Gma02g02003 02 45484692 45499218 GST