Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g01330 ATGTCTGGACTGATTGAAGGACTTCCTGATGCTGTTGCAATCAGGTGCCTTGCATGGGTTCCCTTCTACCTCCATCCAAAGTTAGAGCTTGTCTCTCGTGCTTGGCGAGCAGTTGTCCGTGGCCCTGAACTATTTAAAGCTCGACAGGAGCTTGGTTCGTCAGAGGATTTGTTATGTGTCTGTGCTTTTGAACCAGAGAACTTATGGCAGTTGTATGACCCTCTGCGAGATCTCTGGATTACTCTTCCTGTTCTACCCTCAAGAATCAGGCACCTTTCACATTTTGGTGCTGTCTCCACTGCTGGAAAGTTGTTTGTAATTGGTGGTGGAAGTGATGCTGTTGATCCTTTGACGGGTGACCAAGATGGTTGTTTTGCAACAAATGAAGTCTGGTCGTATGACCCTGTAGTACGGCAATGGTCCCCCCGTGCAGCAATGCTCGTTCCCCGTTCTATGTTTGCATGCTGTGTTATGAATGGAAAAATAGTTGTGGCCGGGGGCTTCACTAGCTGCAGAAAGTCAATATCTCAAGCAGAAATGTATGACCCTGAGAAAGATGTTTGGATTCCAATGCCTGATCTTCATCGCACCCATAATTCAGCCTGTTCAGGAGTGGTGATTGGAGGAAAGGTGCATGTACTGCACAAGGATATGTCAACGGTGCAAGTTTTAGACAATGCAGGTCAGTGGACGGTTGAGGAATATGGGTGGCTCCATGGTCAAATGGCAGTTATCAGGGATGCCCTTTATGTAATAAGCTATGGATTAATCATCAAGCAAGACAAAAAAATGAGGAAGGTTGTAGGTTCAGCTTCCGAGTTTCGAAGGAGAATTGGATTTGCAATGATAGGTTTAGGTGATGAATTATATGTGATTGGAGGTGTCATTGGCCCTGACAGGTGGAATTGGGACATCAAGCCACTGTCTGATGTTGATGTTCTTACACTTGCGAGCGACAGACCGACGTGGCGCCAAGCAGCTCCAATGACACGGTGTGGTGGTACCATTCTTGTGCaacaagGACTTATGCTGCTGAGAAACAGATCAAGAGCTGTGACGAAGCCAAGTTTGATGGGAGATCAGAGTTGCAAAAGAACAATCATCCCTTCTCTATTTTCACCAAAATTCCGAGACTTCACTGTGAAGTGTCTCTCAGCAGGAGCTGAGGCTTTGAGAAGCCCCACATCGATTCTTGAGACCAGAGCCTTATCATCCCCATTTGGGAGTCCTTTGTCACATGACAAGAAGATAGAAGCAGCTATTACCTCCCCAAGAATGCCCTCAGAAAACACACCCTTTTCCTCAAAACGCATTGGCCTTGCTCTTGTTGGTGCACTCAAAGATGAAACTTTTCCTCATAATTCAACTAAACCAAGCAGTGGAACTGTTCTTTTTGGAACTAAGCATAGAGTGAAAATTCCACCTTTGCCACTGCCACCACCTTCATTTGAATCCAAAACATGTGCTTCTGATTGTGCTGCCAAAACCAATGATTCGCAAAATTTTGCAACAGGTCTTATGACTTTGAGTGAGATGGAGCTTTCCGAGGAGTACACGTGTGTGATAGCACATGGACCTAATCCTAGAACAACACACATATTCGAAAATTGTATTGTGGAAAGTTACTGTTCCCTGCCCAATACCCCCAACTCTCCTTCACTCAATTTCCTTAGCTTCTGTCACACTTGCAAGAAGCACCTTGAGCAGACTAAGGACATTTTTATTTACAGAGGAGAGAAAGCTTTCTGCAGCAAAGAATGTCGCCACCAAGAGATGGTGCAAGATGGAGCAAGAAATTCAGAATTTGACAGATACTAA 1818 0.4499 MSGLIEGLPDAVAIRCLAWVPFYLHPKLELVSRAWRAVVRGPELFKARQELGSSEDLLCVCAFEPENLWQLYDPLRDLWITLPVLPSRIRHLSHFGAVSTAGKLFVIGGGSDAVDPLTGDQDGCFATNEVWSYDPVVRQWSPRAAMLVPRSMFACCVMNGKIVVAGGFTSCRKSISQAEMYDPEKDVWIPMPDLHRTHNSACSGVVIGGKVHVLHKDMSTVQVLDNAGQWTVEEYGWLHGQMAVIRDALYVISYGLIIKQDKKMRKVVGSASEFRRRIGFAMIGLGDELYVIGGVIGPDRWNWDIKPLSDVDVLTLASDRPTWRQAAPMTRCGGTILVQQGLMLLRNRSRAVTKPSLMGDQSCKRTIIPSLFSPKFRDFTVKCLSAGAEALRSPTSILETRALSSPFGSPLSHDKKIEAAITSPRMPSENTPFSSKRIGLALVGALKDETFPHNSTKPSSGTVLFGTKHRVKIPPLPLPPPSFESKTCASDCAAKTNDSQNFATGLMTLSEMELSEEYTCVIAHGPNPRTTHIFENCIVESYCSLPNTPNSPSLNFLSFCHTCKKHLEQTKDIFIYRGEKAFCSKECRHQEMVQDGARNSEFDRY 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g01330 605 PANTHER F-BOX/KELCH-REPEAT PROTEIN SKIP30 2 336 - -
Gma02g01330 605 SMART kelc_smart 103 160 IPR006652 GO:0005515
Gma02g01330 605 SMART kelc_smart 161 208 IPR006652 GO:0005515
Gma02g01330 605 SMART kelc_smart 288 341 IPR006652 GO:0005515
Gma02g01330 605 Pfam Kelch motif 149 194 IPR006652 GO:0005515
Gma02g01330 605 Pfam Kelch motif 276 329 IPR006652 GO:0005515
Gma02g01330 605 Pfam Kelch motif 92 146 IPR006652 GO:0005515
Gma02g01330 605 Gene3D - 61 348 IPR015915 GO:0005515
Gma02g01330 605 SUPERFAMILY Kelch motif 61 333 IPR015915 GO:0005515
Gma02g01330 605 ProSiteProfiles Zinc finger FLZ-type profile. 555 599 IPR007650 -
Gma02g01330 605 PANTHER F-BOX/KELCH-REPEAT PROTEIN SKIP4 2 336 - -
Gma02g01330 605 Pfam zinc-finger of the FCS-type, C2-C2 551 596 IPR007650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g01330 Gma-Chr2 15446717 15454585 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g01330 8 266 Miscellaneous Gene Families AT4G33900 25.000 8.35e-12 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g01330 - - gmx:100789819 702.205
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma02g01330 02 15446717 15454585 Gma02g01330 02 15446717 15454585 ECH
Gma10g00269 10 2460746 2462499 Gma02g01330 02 15446717 15454585 GST
Gma19g01490 19 44251883 44254261 Gma02g01330 02 15446717 15454585 PCT
Gma03g01433 03 40544954 40547322 Gma02g01330 02 15446717 15454585 PCT
Gma02g01330 02 15446717 15454585 Gma19g01490 19 44251883 44254261 PCT
Gma02g01330 02 15446717 15454585 Gma03g01433 03 40544954 40547322 PCT