Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g00253 ATGAGCACTTCTCAACAACGTTATCTCCTCTTCGCTTTCACAACGTTAATAGTTGTCTTCAGCTTCAACACTTCACCAGTCTCAGCTCGTTTATTCCCCAACGTGTCTTCCATCCCAACCTGGAACTCCTCCCACGCGCCACCGGGTGGCGCGTGGAATGCTTATCGCAACTTCACCGGATGCCGCCCGGGAAAAACATATAACGGACTTTCAAATCTGAAAAACTACTTTCAGTATTTTGGCTATATCTCGAAAGCGTTGTCGAAGTCATCCAACTTCACGGATGACTTTGACGACGCGCTCGAGGCAGCCATCAAAGCCTACCAGAAGAACTTCAACCTCAACATCACGGGCGAGCTTGACGACCCTACGATGAATCAAATCGTCAAGCCACGCTGTGGCGTGGCTGACATCATCAACGGAACCACAACAATGAACTCCGGGAAGTCAAACACCACTGATTCACCGAAGTTTCACTCGGTGGCTCATTATTCATTCTTCGACGGCCAGCCGCGGTGGCCGGAGGGAACGCAAGAACTAACCTACGCCTTCGATCCGGACAACGCTCTCGACGACGTGAGTAAGACCGTGTTTGGCAACGCGTTTAGCAGATGGTCTGAGGTGACCACAATTTCTTTCCGCGAAACGTCGTCGTACGCGGCTGCGGACATAAGAATAGGGTTTTACGGTGGGGACCACGGGGACGGTGAGCCTTTCGACGGCGTGTTGGGCACGTTGGCACACGCGTTCTCGCCGACGAACGGGAGGTTCCATCTCGACTCGGCGGAGGACTGGGTGGCCTCCGGCGACGTGACAAAGGCGTCGCTGTCGAACGCGGtggaccttgaatccgtcgcggtgcatgagattgggcacttgctagggttagggcactcttccgtcgaagatgctattatgtaccctacgataaccgcgagaacaaggaaggtggagctcAATGAAGATGATATTCTAGGGATTCAGGTTCTCTACGGTTCCAACCCTAACTTCACGGGAACTCCTGCTACGTCTTCGCGACAGAGCGACACGAGCGACGGTGGTGTTAGGCACGTGGGAGTCACGGGCGCTGTGCTTTTCACCTTCCTTTTGTTCTTCTTCGTGTTTGGATTGCACGTGTGA 1140 0.4798 MSTSQQRYLLFAFTTLIVVFSFNTSPVSARLFPNVSSIPTWNSSHAPPGGAWNAYRNFTGCRPGKTYNGLSNLKNYFQYFGYISKALSKSSNFTDDFDDALEAAIKAYQKNFNLNITGELDDPTMNQIVKPRCGVADIINGTTTMNSGKSNTTDSPKFHSVAHYSFFDGQPRWPEGTQELTYAFDPDNALDDVSKTVFGNAFSRWSEVTTISFRETSSYAAADIRIGFYGGDHGDGEPFDGVLGTLAHAFSPTNGRFHLDSAEDWVASGDVTKASLSNAVDLESVAVHEIGHLLGLGHSSVEDAIMYPTITARTRKVELNEDDILGIQVLYGSNPNFTGTPATSSRQSDTSDGGVRHVGVTGAVLFTFLLFFFVFGLHV 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g00253 379 Pfam Putative peptidoglycan binding domain 69 127 IPR002477 -
Gma02g00253 379 SMART col_5 169 333 IPR006026 GO:0006508|GO:0008237|GO:0008270
Gma02g00253 379 SUPERFAMILY PGBD-like 59 138 IPR036365 -
Gma02g00253 379 Gene3D Collagenase (Catalytic Domain) 60 338 IPR024079 GO:0008237
Gma02g00253 379 PANTHER MATRIX METALLOPROTEINASE 7 379 - -
Gma02g00253 379 Pfam Matrixin 177 332 IPR001818 GO:0004222|GO:0006508|GO:0008270|GO:0031012
Gma02g00253 379 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 167 336 - -
Gma02g00253 379 PRINTS Matrixin signature 128 141 IPR021190 GO:0004222|GO:0006508|GO:0008270
Gma02g00253 379 PRINTS Matrixin signature 198 213 IPR021190 GO:0004222|GO:0006508|GO:0008270
Gma02g00253 379 PRINTS Matrixin signature 222 250 IPR021190 GO:0004222|GO:0006508|GO:0008270
Gma02g00253 379 PRINTS Matrixin signature 285 310 IPR021190 GO:0004222|GO:0006508|GO:0008270
Gma02g00253 379 PRINTS Matrixin signature 319 332 IPR021190 GO:0004222|GO:0006508|GO:0008270
Gma02g00253 379 CDD ZnMc_MMP 172 332 IPR033739 GO:0008237|GO:0008270
Gma02g00253 379 PANTHER MATRIX METALLOPROTEINASE 7 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g00253 Gma-Chr2 2536249 2537746 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g00253 - - gmx:100781471 736.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma02g00253 02 2536249 2537746 Gma02g00253 02 2536249 2537746 ECH