Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g00246 ATGAGAACCCATTTTCACTCTCTCCCATTATTTTTTTGGTTCACTCTATCCCTTATATTGGGTCAAACCCGACCCGACCCTGACCCACTTCAAGATTATTGTGTTGCAGATAGCAAAAGTAATTTTTTCATTAATGGGGTACCTTGCATTAACCCAGATAAAGTTTCCTCATCCCATTTTGTCACATCTGCTTTATCAAAAACTGGCAACACTAGTAACCAATTTGGCTTCAGTGTCACAGCCACCACCACTGCTAATCTTCCTGGGCTTAACACCTTGGGCCTGGTACTGGTCCGGGTCGATATAGCGGGCAACGGGATAGTGCCACCTCACTCGCATCCGAGGGCCTCGGAAGTTACCACTTGCCTAAAGGGCCTGCTTCTTGTGGGCTTTGTTGACACAAGTAACCGTGTCTTTACCCAGAACTTGAGGCCTGGTGAGTCATTTGTGTTCCCAAAGGGCCTGGTCCACTTCTTGTTCAATAGTGATTCAAGGGAACCAGCAATAGCCATATCTGGTCTCAATAGCCAGAACCCAGGAGCACAAATTGCATCACTTGCAACATTTGCTAGCAAGCCTCCTATTCCTGATGACATTCTTAAGAAAGCTTTCCAAATTTCCAAAGGAGAAGTGGAAACTATTCGTAGAAACCTTGGAGGATGA 663 0.4555 MRTHFHSLPLFFWFTLSLILGQTRPDPDPLQDYCVADSKSNFFINGVPCINPDKVSSSHFVTSALSKTGNTSNQFGFSVTATTTANLPGLNTLGLVLVRVDIAGNGIVPPHSHPRASEVTTCLKGLLLVGFVDTSNRVFTQNLRPGESFVFPKGLVHFLFNSDSREPAIAISGLNSQNPGAQIASLATFASKPPIPDDILKKAFQISKGEVETIRRNLGG 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g00246 220 Pfam Cupin 65 211 IPR006045 -
Gma02g00246 220 SUPERFAMILY RmlC-like cupins 55 218 IPR011051 -
Gma02g00246 220 SMART Cupin_1_3 63 212 IPR006045 -
Gma02g00246 220 CDD cupin_OxOx 26 218 - -
Gma02g00246 220 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 1 MEMBER 1 12 219 - -
Gma02g00246 220 ProSitePatterns Germin family signature. 106 119 IPR019780 GO:0030145
Gma02g00246 220 Gene3D Jelly Rolls 25 220 IPR014710 -
Gma02g00246 220 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 12 219 - -
Gma02g00246 220 PRINTS Germin signature 111 131 IPR001929 GO:0030145
Gma02g00246 220 PRINTS Germin signature 141 161 IPR001929 GO:0030145
Gma02g00246 220 PRINTS Germin signature 175 190 IPR001929 GO:0030145
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g00246 Gma-Chr2 2483609 2484724 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g00246 26 219 Miscellaneous Gene Families AT5G39130 44.444 2.90e-53 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g00246 - - gmx:100500154 445.277
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma02g00246 02 2483609 2484724 Gma02g00246 02 2483609 2484724 ECH
Gma01g00343 01 4077151 4077813 Gma02g00246 02 2483609 2484724 GST