Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g00194 ATGAGGAGAGATCACATAACATTAGCAAAACTCGTATCAGATGGCTTCTACAGAGAAGCACTCTCCCTCTTCTCCCACCTCCATTCTTGTTCTTCCCACACCCTTCACTCTTTCACCTTCCCCACTCTCTTCAAAGCATGCACCAACCTCCGTTCCCCTTCCCACACCCAAACCCTCCATGCCCATCTCCTCAAAACCGGTTTCCATTCCGACCCTTATGCTTCCTCCGCCCTCACTGCCGCCTACGCCGCCAACCCTCGCCATTTCCTCGACGCACTCAAGGCGTTCGACGAAATGCCCCAACCAAACGTCGCATCTCTAAATGCTGCACTTTCTGGCTTCTCGCGAAACGGGCGTCGCGGAGAAGCTCTCCGGGTGTTCCGGCGAGCTGGGTTGGGCCCCTTGAGGCCCAACTCGGTCACTATTGCGTGCATGCTCGGCGTTCCTCGTGTGGGTGCCAACCACGTTGAGATGATGCATTGCTGCGCGGTGAAGTTAGGGGTTGAATTTGATGCCTATGTTGCCACCTCGCTTGTAACTGCGTATTGTAAGTGTGGAGAGGTGGTTTCGGCTTCTAAGGTGTTTGAGGAGTTGCCTGTTAAGAGTGTGGTGAGTTACAACGCTTTCGTTTCGGGTTTGTTGCAGAATGGGGTTCCTCGTTTGGTGTTGGATGTGTTTAAGGAGATGATGAGGGGGGAGGAGTGTGTGGAGTGCAAACTCAATTCAGTGACGTTGGTGTCTGTTCTTTCTGCGTGTGGTAGTCTACAAAGTATTCGTTTTGGGAGGCAGGTTCATGGGGTTGTTGTGAAACTTGAAGCAGGTGATGGGGTTATGGTGATGACTGCACTTGTAGATATGTATTCAAAGTGTGGTTTTTGGCGTTCTGCTTTTGAGGTTTTCACAGGGGTGGAAGGGAATAGGAGAAATTTGATCACTTGGAATTCCATGATTGCGGGAATGATGTTAAATAAAGAGAGTGAGAGAGCTGTTGATATGTTTCAAAGGCTGGAATCTGAAGGGTTGAAGCCTGATTCAGCTACTTGGAATTCCATGATCAGTGGGTTTGCACAACTAGGGGAGTGTGGGGAAGCTTTTAAGTACTTTGGGCAAATGCAGTCTGTTGGTGTGGCTCCATGTTTGAAAATTGTTACTAGCCTTTTGTCAGCATGTGCAGATTCATCTATGTTACAGCATGGAAAAGAGATACATGGGTTATCTTTAAGAACTGATATCAATAGGGATGATTTTTTGGTAACTGCTCTGGTTGATATGTACATGAAATGTGGGCTTGCTTCTTGGGCACGAGGAGTTTTTGATCAGTATGATGCAAAACCAGATGATCCGGCATTTTGGAATGCAATGATTGGTGGGTATGGAAGAAATGGAGACTATGAGTCTGCCTTTGAAATCTTTGATGAAATGCTGGAAGAAATGGTTCGACCAAACAGTGCAACATTTGTCAGTGTTTTATCTGCTTGCAGCCACACGGGTCAGGTTGATAGAGGGTTGCATTTTTTCAGAATGATGAGAATAGAGTATGGCTTGCAGCCAAAGCCTGAGCATTTTGGTTGCATAGTTGATCTTTTAGGTCGGTCTGGTCGATTGAGTGAAGCTCAAGACCTGATGGAGGAATTAGCAGAGCCTCCTGCATCTGTTTTTGCTTCTTTGCTTGGTGCTTGTAGGTGTTACCTAGATTCCAATCTTGGGGAAGAAATGGCCAAGAAGCTTCTAGATGTAGAACCAGAAAACCCTGCTCCTCTGGTGGTATTGTCTAACATATATGCTGGACTGGGAAGATGGAAGGAAGTAGAAAGAATAAGAGGGGTGATCACGGATAAGGGACTGGACAAACTCTCTGGCTTTAGCATGATAGAACTTGCATGA 1884 0.4697 MRRDHITLAKLVSDGFYREALSLFSHLHSCSSHTLHSFTFPTLFKACTNLRSPSHTQTLHAHLLKTGFHSDPYASSALTAAYAANPRHFLDALKAFDEMPQPNVASLNAALSGFSRNGRRGEALRVFRRAGLGPLRPNSVTIACMLGVPRVGANHVEMMHCCAVKLGVEFDAYVATSLVTAYCKCGEVVSASKVFEELPVKSVVSYNAFVSGLLQNGVPRLVLDVFKEMMRGEECVECKLNSVTLVSVLSACGSLQSIRFGRQVHGVVVKLEAGDGVMVMTALVDMYSKCGFWRSAFEVFTGVEGNRRNLITWNSMIAGMMLNKESERAVDMFQRLESEGLKPDSATWNSMISGFAQLGECGEAFKYFGQMQSVGVAPCLKIVTSLLSACADSSMLQHGKEIHGLSLRTDINRDDFLVTALVDMYMKCGLASWARGVFDQYDAKPDDPAFWNAMIGGYGRNGDYESAFEIFDEMLEEMVRPNSATFVSVLSACSHTGQVDRGLHFFRMMRIEYGLQPKPEHFGCIVDLLGRSGRLSEAQDLMEELAEPPASVFASLLGACRCYLDSNLGEEMAKKLLDVEPENPAPLVVLSNIYAGLGRWKEVERIRGVITDKGLDKLSGFSMIELA 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g00194 627 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 103 137 IPR002885 -
Gma02g00194 627 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 447 481 IPR002885 -
Gma02g00194 627 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 309 343 IPR002885 -
Gma02g00194 627 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 344 378 IPR002885 -
Gma02g00194 627 Gene3D Tetratricopeptide repeat domain 443 619 IPR011990 GO:0005515
Gma02g00194 627 Gene3D Tetratricopeptide repeat domain 5 150 IPR011990 GO:0005515
Gma02g00194 627 Pfam PPR repeat 281 300 IPR002885 -
Gma02g00194 627 Pfam PPR repeat 204 231 IPR002885 -
Gma02g00194 627 Pfam PPR repeat 106 129 IPR002885 -
Gma02g00194 627 Pfam PPR repeat 176 199 IPR002885 -
Gma02g00194 627 Pfam PPR repeat 522 545 IPR002885 -
Gma02g00194 627 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 171 205 IPR002885 -
Gma02g00194 627 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 9 622 - -
Gma02g00194 627 Pfam PPR repeat family 450 494 IPR002885 -
Gma02g00194 627 Pfam PPR repeat family 309 356 IPR002885 -
Gma02g00194 627 Gene3D Tetratricopeptide repeat domain 153 263 IPR011990 GO:0005515
Gma02g00194 627 Gene3D Tetratricopeptide repeat domain 270 404 IPR011990 GO:0005515
Gma02g00194 627 PANTHER OS07G0578800 PROTEIN-RELATED 9 622 IPR045215 GO:0003723|GO:0009451
Gma02g00194 627 Pfam E motif 563 625 IPR046848 -
Gma02g00194 627 TIGRFAM PPR: pentatricopeptide repeat domain 311 345 IPR002885 -
Gma02g00194 627 TIGRFAM PPR: pentatricopeptide repeat domain 204 231 IPR002885 -
Gma02g00194 627 TIGRFAM PPR: pentatricopeptide repeat domain 451 482 IPR002885 -
Gma02g00194 627 TIGRFAM PPR: pentatricopeptide repeat domain 347 378 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g00194 Gma-Chr2 1863702 1865585 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g00194 35 626 Glycoside Hydrolase AT3G49170 27.515 4.17e-69 238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g00194 - - gmx:100809263 1232.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma02g00194 02 1863702 1865585 Gma02g00194 02 1863702 1865585 ECH