Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g02249 ATGGCGAAGGAGTTGTTGACTCTTGATAATGGCACAACCTGCACATCATGGAACTATTCTGGCACCAGGCTCGCTGCGGGTTCCGTTGATGGCACGCTTTCAATCTTCGATTCCCGCGACCCACCTTCATCTTCTTCCCTCCATTCTACTTTCAAATCTAGGGTTCTAGAAGGAAACATTGTGAAGATTGTTTGGATTCCGCCAGAGTATGGTGATGCAGTTGCGTGCATTTCTGCCGATGGAATTGTTTCATTGTGGGAGGAGGTCGCAGAAGATTCCCAGTCTCTTCAGTGGAAGATGTGCAAAAGCTTTGGAAACAGTTCAAGCAAAGTCCTTGATGCTCAATTTGGAATCTCTCTGACTAGTTTGAAAATGGTTGCTGCATATTCAGATGGGAATGTAAGAGTTTTTGAGCTCTCGGATCCCTTGGAACTGAGAAACTGGCAGCTTCAGGCTGAATTTCAAAATGTTATCGAGTCAGTGTCTTCGTTTGGAAAGGCCTCATGCCTCTCAGCATCCATATCTTGGAATCCACAAAAAGGTGGAAGCCAGGAGTCCAGCTTCCTTGTAGGCTTCAATTCAAATACATCAGAGCTTAATTCTTCTAAGGTTTGGGAATTTGATCAGGCTCATCAAAGATGGCTTCCTGTGGCAGAACTGGCACTGCCTGAGGAGAAGGGTGATCAGCTTTATGCTGTTGCATGGGCACCAAATATTGGCAGACCATATGAGATCATTGCGGTTGCAACCCACAAGGGACTTGCAATATGGCATCTTGGATTGAACCCTGATCATGATGGAAGACTCCCAGTAGAGAGAGTTGCACTACTGTCAGGTCACGAGGGCATGGTGTGGCAAATGGAGTGGGATATGAGTGGAATGACTTTGGCTACTACAGGTCATGATGGAATGGTCCGATTATGGCAGTCGAATCTCAATGGCGTTTGGCATCAGCAAGCTGCATTTGAACCCACTTCTTAG 981 0.4638 MAKELLTLDNGTTCTSWNYSGTRLAAGSVDGTLSIFDSRDPPSSSSLHSTFKSRVLEGNIVKIVWIPPEYGDAVACISADGIVSLWEEVAEDSQSLQWKMCKSFGNSSSKVLDAQFGISLTSLKMVAAYSDGNVRVFELSDPLELRNWQLQAEFQNVIESVSSFGKASCLSASISWNPQKGGSQESSFLVGFNSNTSELNSSKVWEFDQAHQRWLPVAELALPEEKGDQLYAVAWAPNIGRPYEIIAVATHKGLAIWHLGLNPDHDGRLPVERVALLSGHEGMVWQMEWDMSGMTLATTGHDGMVRLWQSNLNGVWHQQAAFEPTS 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g02249 326 PANTHER NUCLEOPORIN SEH1 6 325 IPR037597 GO:1904263
Gma01g02249 326 Pfam WD domain, G-beta repeat 277 308 IPR001680 GO:0005515
Gma01g02249 326 Pfam WD domain, G-beta repeat 13 37 IPR001680 GO:0005515
Gma01g02249 326 ProSiteProfiles Trp-Asp (WD) repeats profile. 277 309 IPR001680 GO:0005515
Gma01g02249 326 Gene3D - 9 323 IPR015943 GO:0005515
Gma01g02249 326 PANTHER NUCLEAR PORE COMPLEX PROTEIN SEC13 / SEH1 FAMILY MEMBER 6 325 IPR037363 GO:0005198
Gma01g02249 326 SUPERFAMILY WD40 repeat-like 9 311 IPR036322 GO:0005515
Gma01g02249 326 SMART WD40_4 270 309 IPR001680 GO:0005515
Gma01g02249 326 SMART WD40_4 97 138 IPR001680 GO:0005515
Gma01g02249 326 SMART WD40_4 44 87 IPR001680 GO:0005515
Gma01g02249 326 SMART WD40_4 1 37 IPR001680 GO:0005515
Gma01g02249 326 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 277 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g02249 Gma-Chr1 57671478 57674289 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g02249 K14299 - gmx:100812825 650.203
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g02249 01 57671478 57674289 Gma01g02249 01 57671478 57674289 ECH
Gma01g02249 01 57671478 57674289 Gma11g00166 11 1293422 1296134 GST