Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g02246 ATGGCTTCAGATGATGGTGTCAAACCTCCGACTCACGAGCTTCTCAGCATCTGCAAGTCTCTCGTCGCCGGTGGAGTTGCCGGTGGAGTGTCACGAACTGCGGTAGCTCCTCTGGAGAGATTGAAGATTCTGCTGCAGGTTCAAAATCGCCAAGATATAAAATACAACGGAACAATTCAAGGCTTAAAATATATATGGAAAACTGAGGGTTTTAGAGGAATGTTTAAAGGAAACGGAACTAATTGTGCTCGTATTGTCCCAAATTCAGCAGTGAAGTTCTTTAGCTATGAGCAAGCTTCACTGGGTATTTTATGGCTCTACCAGCGGCAACCTGGAAATGAAGAAGCTCAGCTCACTCCCATTCTGCGTCTTGGAGCTGGCGCATGCGCGGGAATCATTGCCATGTCTGCCACTTATCCAATGGACATGGTACGAGGAAGGCTAACCGTCCAGACAGAAGCATCTCCTCGTCAATACAGAGGAATTTTTCATGCTCTTTCAACAGTCTTCCGGGAAGAAGGCCCTCGAGCTTTGTATAAAGGCTGGCTACCTTCAGTCATAGGAGTTATACCGTATGTGGGTCTTAATTTTTCCGTATATGAATCTCTGAAAGACTGGTTGATTCGGTCTAAACCATTTGGGATGAAAGCTCAAGACTCTGAGCTAAGTGTGACGACAAGGCTTGCATGTGGGGCTGCTGCTGGAACAGTTGGCCAGACTGTGGCTTACCCACTTGATGTCATTCGCCGAAGAATGCAAATGGTGGGATGGAAAGATGCTGCTTCAGTAGTTGCTGGTGAGGGGAAGAGCAAACTTGAGTATACTGGCATGGTTGATGCATTCAGGAAAACTGTGCAGCATGAAGGTTTTGGAGCATTATACAAGGGCCTAGTTCCCAATTCAGTGAAGGTGGTCCCTTCTATAGCTATTGCTTTCGTGACATACGAGATGGTCAAGGACATTCTTGGTGTAGAAATGAGAATATCTGACTGA 993 0.4632 MASDDGVKPPTHELLSICKSLVAGGVAGGVSRTAVAPLERLKILLQVQNRQDIKYNGTIQGLKYIWKTEGFRGMFKGNGTNCARIVPNSAVKFFSYEQASLGILWLYQRQPGNEEAQLTPILRLGAGACAGIIAMSATYPMDMVRGRLTVQTEASPRQYRGIFHALSTVFREEGPRALYKGWLPSVIGVIPYVGLNFSVYESLKDWLIRSKPFGMKAQDSELSVTTRLACGAAAGTVGQTVAYPLDVIRRRMQMVGWKDAASVVAGEGKSKLEYTGMVDAFRKTVQHEGFGALYKGLVPNSVKVVPSIAIAFVTYEMVKDILGVEMRISD 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g02246 330 Pfam Mitochondrial carrier protein 221 322 IPR018108 -
Gma01g02246 330 Pfam Mitochondrial carrier protein 16 99 IPR018108 -
Gma01g02246 330 Pfam Mitochondrial carrier protein 119 209 IPR018108 -
Gma01g02246 330 PRINTS Mitochondrial carrier protein signature 20 33 IPR002067 GO:0055085
Gma01g02246 330 PRINTS Mitochondrial carrier protein signature 33 47 IPR002067 GO:0055085
Gma01g02246 330 PRINTS Mitochondrial carrier protein signature 77 97 IPR002067 GO:0055085
Gma01g02246 330 PRINTS Mitochondrial carrier protein signature 133 151 IPR002067 GO:0055085
Gma01g02246 330 PRINTS Mitochondrial carrier protein signature 179 197 IPR002067 GO:0055085
Gma01g02246 330 PRINTS Mitochondrial carrier protein signature 231 253 IPR002067 GO:0055085
Gma01g02246 330 SUPERFAMILY Mitochondrial carrier 13 317 IPR023395 -
Gma01g02246 330 Gene3D Mitochondrial carrier domain 12 324 IPR023395 -
Gma01g02246 330 PANTHER MITOCHONDRIAL CARRIER PROTEIN-RELATED 1 325 - -
Gma01g02246 330 ProSiteProfiles Solute carrier (Solcar) repeat profile. 118 206 IPR018108 -
Gma01g02246 330 ProSiteProfiles Solute carrier (Solcar) repeat profile. 15 102 IPR018108 -
Gma01g02246 330 ProSiteProfiles Solute carrier (Solcar) repeat profile. 222 321 IPR018108 -
Gma01g02246 330 PANTHER SOLUTE CARRIER FAMILY 25 1 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g02246 Gma-Chr1 57655137 57657907 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g02246 21 325 EF-hand Containing Proteins AT5G51050 38.689 2.91e-66 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g02246 K14684 - gmx:100784834 642.499
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g02246 01 57655137 57657907 Gma01g02246 01 57655137 57657907 ECH
Gma01g02246 01 57655137 57657907 Gma11g00168 11 1303860 1307037 GST