LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma01g02141	ATGTCAGCAACCTTAACATGTAAACTAGGAGACAACAACCTAAGCTTAAACGATAAAAACGACCAACCCCCTTCACCTCCTCAGCCCCTACAAAAATGCCCTGCCAATATGGTTTCGATGGTGGTCTCAGAGCTAAGAATTCAACGAGGAATAGCCCTTCCAATGGTGGCCATGAATTTGGCTTGGTTTGCCAAGACAGCCATCACAACAGCATTTTTAGGCCGTCTTGGGGAGCTTAGTTTAGCAGGTGGAGCTCTCGGCTTCACTTTTGCTAATGTCACTGGCTTCTCTGTCCTCAATGGTCTATGTGGTGCCATGGAACCCATATGTGGACAGGCTCATGGTGCCAAAAACTTCAGGCTCCTTCACAAGACCCTTCTCATGGCAATCTCGTTGTTGCTATTGGTATCACTTCCCATCACTTTCTTGTGGCTTAATGTTGACAAGATTTTGATCCTTTTTGGCCAGCAACAAGACATCTCCACTGTTGCCAGGACCTATGTTTCATGTCTCATTCCTGACTTGTTTGTTGCCTCACTGTTCTGTCCCTTAAAAGCCTACTTGAGTTGTCAGAGCATAACTCTTCCCACCATGTTTAGTTCTGCTGTGGCACTAGCCTTCCACATACCAATTAACATAGTGCTCTCAAGGACCATGGGCCTCAGAGGAGTTTCCATGGCAGTTTGGATAACTGATCTTATTGTCGTGGTTTTGCTAGCCATTTATGTTTTAATTCTTGAGAACAAAAAGGAAAGCATGTGGAAGGAAGGAGGGTGGTGGGATCAGAGCATTGAAGATTGGATAAGGCTGCTCAAGCTTTGTGGATCATGCTGCCTCAACACATGCCTTGAGTGGTGGTGTTATGAGATTCTAGTTTTACTTACTGGCCACCTCACAAATGCTAAGCAAGCAGTGGGAGTTTTGGCCATTGTGCTAAACTTCGACTATTTGCTTTTCTCAGTGATGCTGTCACTAGCCACTTGTGTTTCCACACGTGTCTCAAATGAGCTTGGTGCGAACCAAGCTGGTCTTGCTTACCGATCAGCATGTGTGTCTCTGGCATTGGGCTTTATCTCTGGTTGCATAGGTAGCTTGGTGATGGTGGCTGCCAGGGGAATTTGGGGGCCACTGTTTAGCCATGATATGGCAATTATAAAGGGAGTAAAGAAGACAATGTTGCTGATGGCTCTGGTTGAAGTGTTTAATTTTCCGCTGGCAGTTTGTGGAGGCATAGTTCGAGGGACAGCACGACCCTGGTTGGGCATGTACGCGAATCTAGGTGGATTTTATTTCCTTGCTCTGCCACTTGGTGTTGTTTTTGCCTTCAAGCTCTGTCTTGGGCTTGTTGGACTCCTCATTGGACTTCTGACTGGTATTGTTACCTGCTTGACGCTGTTATTGGTATTTATTGCGCGGTTAAATTGGGTGGAGGAAGCTGCCAAGGCACAAACACTAACAGGCCAAGAGCAGGTTAAGGAACTTTCCAAATATGACGCAGAAGAACGAATTGACGCCCATGAAAAAGATGTAGTGTAA	1536	0.4596	MSATLTCKLGDNNLSLNDKNDQPPSPPQPLQKCPANMVSMVVSELRIQRGIALPMVAMNLAWFAKTAITTAFLGRLGELSLAGGALGFTFANVTGFSVLNGLCGAMEPICGQAHGAKNFRLLHKTLLMAISLLLLVSLPITFLWLNVDKILILFGQQQDISTVARTYVSCLIPDLFVASLFCPLKAYLSCQSITLPTMFSSAVALAFHIPINIVLSRTMGLRGVSMAVWITDLIVVVLLAIYVLILENKKESMWKEGGWWDQSIEDWIRLLKLCGSCCLNTCLEWWCYEILVLLTGHLTNAKQAVGVLAIVLNFDYLLFSVMLSLATCVSTRVSNELGANQAGLAYRSACVSLALGFISGCIGSLVMVAARGIWGPLFSHDMAIIKGVKKTMLLMALVEVFNFPLAVCGGIVRGTARPWLGMYANLGGFYFLALPLGVVFAFKLCLGLVGLLIGLLTGIVTCLTLLLVFIARLNWVEEAAKAQTLTGQEQVKELSKYDAEERIDAHEKDVV	511

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gma01g02141	511	Pfam	MatE	277	438	IPR002528	GO:0015297\|GO:0016020\|GO:0042910\|GO:0055085
	Gma01g02141	511	Pfam	MatE	54	213	IPR002528	GO:0015297\|GO:0016020\|GO:0042910\|GO:0055085
	Gma01g02141	511	MobiDBLite	consensus disorder prediction	1	30	-	-
	Gma01g02141	511	PANTHER	PROTEIN DETOXIFICATION 56	33	491	-	-
	Gma01g02141	511	TIGRFAM	matE: MATE efflux family protein	54	451	IPR002528	GO:0015297\|GO:0016020\|GO:0042910\|GO:0055085
	Gma01g02141	511	MobiDBLite	consensus disorder prediction	1	21	-	-
	Gma01g02141	511	PANTHER	MULTIDRUG RESISTANCE PROTEIN	33	491	-	-
	Gma01g02141	511	CDD	MATE_eukaryotic	44	481	IPR045069	GO:0042910\|GO:1990961

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma01g02141	Gma-Chr1	56735200	56736735	Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma01g02141	K03327		-	gmx:100804083	945.266

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gma01g02141	01	56735200	56736735	Gma01g02141	01	56735200	56736735	ECH
	Gma01g02141	01	56735200	56736735	Gma11g00266	11	2111766	2112710	GST