LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma01g02060	ATGGCTCTAACACTTCGCTCTTCAATTTCCCTTGTCAACCAGAAAGAAACCAAACTCCCAAAAGCCAAAGACGAGGTTCCCACCAAAGTGTTTTACTTTGGAAAAACCAACCCATCTTTCCGTCTCAGAGCAAAGAGTTCCATGCAACAAACACACGTCACACCAAACAACAGCTTTAACTCCGAAGTAACGATGATAAACGAGAAAAGGGAGAAGGTTCACGCTCCATCGGTTGCACATAGCCACAATGATTCAATGAGAGTGCCCGTGTTTGTGATGCTGCCATTGGACACTGTAACTATGGGAGGGACTTTGAATAAGCCGAGAGCAATGAATGCTAGTTTGATGGCCCTGAAGAGTGCAGGAGTGGAAGGAGTGATGGTGGATGCTTGGTGGGGTTTGGTGGAAAAAGAGGGACCCTTGAAGTATAATTGGGAAGCCTATGCTGAACTTGTGCAGATGGTGCAAAGGCATGGCTTGAAGCTTCAGGTTGTCATGTCTTTCCATCAATGTGGAGGAAATGTTGGAGACTCCTGCAGCATTCCTCTACCTCCATGGGTGTTGGAAGAAATCAGCAAGAACCCTGAGCTGGTTTACACAGACAGATCAGGAAGGAGGAATCCTGAGTACATCTCCTTGGGCTGTGATTCAATGCCTGTTCTGCGCGGAAGGACGCCCCTTCAAGTGTACTCTGATTACATGAGGAGCTTCCGTTACAGATTCAGAGACTATTTGGGCAGTGTTATCATTGAAATTCAAGTGGGGATGGGTCCTTGTGGGGAGCTGAGATATCCATCTTATCCAGAAAGCAATGGAACATGGAGGTTTCCTGGAATTGGAGAATTTCAGTGCTATGACAAGTATATGAGAGCTTCCTTGGAAGCATCAACTGAGGCCATTGGGAAGAAAGAGTGGGGAAAAAATGGACCACATGACTCAGGCCAATACAACCAATTTCCTGAGGACACTGGTTTTTTCCAGAGGGAAGGAACATGGAACACAGAATATGGACGATTCTTCCTTGACTGGTACTCCACCAAACTTCTTGAACACGGTGAGAAGATCCTTGTATCAGCCAAAGGCATTTTCAACTCATGCGGGGTGAAACTATCTGCCAAAGTAGCTGGAATTCATTGGCACTACAAGGCAAGGTCACACGCGGCTGAACTAACTGCAGGCTACTACAACACGCGGTTTCGCGATGGATACCTACCAATAGCACAAATGCTGGCAAAACATGGAGTTGTGCTCAATTTCACCTGCATGGAAATGAGGGACAGAGAGCAACCTGAGCATTGTTCCCCTGAGGGGTTGGTTCATCAAGTGAAGATAGCAGCCAGAACAGCAGAAGCAGAACTTGCTGGGGAGAATGCACTTGAGAGATATGATGCAGGTGCTTTTTCTCAAGTTTTGTCAACAAGTAACTCTGGTTCTGGATTGGCAGCATTCACTTATCTGAGAATGAATAAGAGGTTGTTTGAGGGAGACAATTGGAGGCTCTTTGTGGAGTTTGTGAAAAGCATGTCTGAAGGTGGAAAAAGACAAAGGCTTCCAGAATCTGATTCTTGTGGGACTCATCTTTACGTTGGACACATCACAGGAATTCAGAAGCAGCaagaacaagctcaagaggttgctcttgtgtga	1647	0.4523	MALTLRSSISLVNQKETKLPKAKDEVPTKVFYFGKTNPSFRLRAKSSMQQTHVTPNNSFNSEVTMINEKREKVHAPSVAHSHNDSMRVPVFVMLPLDTVTMGGTLNKPRAMNASLMALKSAGVEGVMVDAWWGLVEKEGPLKYNWEAYAELVQMVQRHGLKLQVVMSFHQCGGNVGDSCSIPLPPWVLEEISKNPELVYTDRSGRRNPEYISLGCDSMPVLRGRTPLQVYSDYMRSFRYRFRDYLGSVIIEIQVGMGPCGELRYPSYPESNGTWRFPGIGEFQCYDKYMRASLEASTEAIGKKEWGKNGPHDSGQYNQFPEDTGFFQREGTWNTEYGRFFLDWYSTKLLEHGEKILVSAKGIFNSCGVKLSAKVAGIHWHYKARSHAAELTAGYYNTRFRDGYLPIAQMLAKHGVVLNFTCMEMRDREQPEHCSPEGLVHQVKIAARTAEAELAGENALERYDAGAFSQVLSTSNSGSGLAAFTYLRMNKRLFEGDNWRLFVEFVKSMSEGGKRQRLPESDSCGTHLYVGHITGIQKQQEQAQEVALV	548

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gma01g02060	548	PANTHER	BETA-AMYLASE	1	548	-	-
	Gma01g02060	548	ProSitePatterns	Beta-amylase active site 1.	169	177	IPR018238	GO:0000272\|GO:0016161
	Gma01g02060	548	PANTHER	-	1	548	IPR001554	GO:0000272\|GO:0016161
	Gma01g02060	548	Pfam	Glycosyl hydrolase family 14	91	504	IPR001554	GO:0000272\|GO:0016161
	Gma01g02060	548	Gene3D	Glycosidases	78	544	-	-
	Gma01g02060	548	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	122	136	IPR001554	GO:0000272\|GO:0016161
	Gma01g02060	548	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	143	161	IPR001554	GO:0000272\|GO:0016161
	Gma01g02060	548	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	165	186	IPR001554	GO:0000272\|GO:0016161
	Gma01g02060	548	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	257	279	IPR001554	GO:0000272\|GO:0016161
	Gma01g02060	548	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	332	351	IPR001554	GO:0000272\|GO:0016161
	Gma01g02060	548	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	368	384	IPR001554	GO:0000272\|GO:0016161
	Gma01g02060	548	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	385	396	IPR001554	GO:0000272\|GO:0016161
	Gma01g02060	548	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	403	426	IPR001554	GO:0000272\|GO:0016161
	Gma01g02060	548	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	438	460	IPR001554	GO:0000272\|GO:0016161
	Gma01g02060	548	SUPERFAMILY	(Trans)glycosidases	87	511	IPR017853	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma01g02060	Gma-Chr1	55998849	56001941	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gma01g02060	1	548	Glycoside Hydrolase	AT4G17090	69.746	0.0	807

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma01g02060	K01177		-	gmx:100786079	1121.3

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gma01g02060	01	55998849	56001941	Gma01g02060	01	55998849	56001941	ECH