Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g02049 ATGGCGTCAGTGTCAGCTCTTGCAAAGTACAAGCTGGTGTTCTTGGGTGATCAGTCTGTGGGAAAAACTAGCATCATCACTCGCTTCATGTATGACAAATTTGACAACACTTATCAGGCCACGATTGGTATTGATTTTTTATCAAAAACTATGTATCTTGAAGATCGAACTGTTCGGCTGCAGCTGTGggacacagctggacaggaaagatttagaagtcttattccaagctacattagggactcatctgttgctgtcaTCGCTTATGATGTTGCAAGCCGCCAAACTTTCCTGAACACATCAAAGTGGATTGAAGAGGTGCGCAGTGAGAGAGGCAGTGATGTTATTATTGTTCTTGTTGGGAACAAAACTGACCTTGTCGATAAGAGGCAAGTCTCTACAGAGGAAGGGGAAGCTAAGTCTCGTGAACTAAACGTCATGTTTATTGAAGCTAGTGCCAAAGCTGGGTTTAATATAAAGGCCCTCTTTCGAAAAATTGCTGCTGCATTACCTGGAATGGAAACACTATCCTCCACAAAACAAGAAGATATGGTTGACGTGAACCTAAGATCTTCTGGTGGCTATCAATCTCAACCTCAGTCCGGCGGATGGACGATTTTTAAAACCCTGAAACTCCACTACTTTGGAGGCAGTCTCAAATCGAAGGTTTTGCTTCTGCACTGCATCTTGCTGAACCAAGGCGTGAAGCTTCAAAACATTGAGTACCAACCTGGTTCCACTCTTACAAGTTACTAG 756 0.3929 MASVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIAYDVASRQTFLNTSKWIEEVRSERGSDVIIVLVGNKTDLVDKRQVSTEEGEAKSRELNVMFIEASAKAGFNIKALFRKIAAALPGMETLSSTKQEDMVDVNLRSSGGYQSQPQSGGWTIFKTLKLHYFGGSLKSKVLLLHCILLNQGVKLQNIEYQPGSTLTSY 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g02049 251 PRINTS Transforming protein P21 ras signature 33 49 - -
Gma01g02049 251 PRINTS Transforming protein P21 ras signature 148 170 - -
Gma01g02049 251 PRINTS Transforming protein P21 ras signature 10 31 - -
Gma01g02049 251 PRINTS Transforming protein P21 ras signature 51 73 - -
Gma01g02049 251 PRINTS Transforming protein P21 ras signature 113 126 - -
Gma01g02049 251 SMART rho_sub_3 12 172 IPR001806 GO:0003924|GO:0005525
Gma01g02049 251 PANTHER DRAB5-RELATED 1 203 - -
Gma01g02049 251 CDD Rab6 10 170 - -
Gma01g02049 251 SMART ran_sub_2 15 215 - -
Gma01g02049 251 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 181 IPR027417 -
Gma01g02049 251 Pfam Ras family 11 169 IPR001806 GO:0003924|GO:0005525
Gma01g02049 251 ProSiteProfiles small GTPase Ras family profile. 5 230 IPR001806 GO:0003924|GO:0005525
Gma01g02049 251 PANTHER GTP-BINDING PROTEIN RAB6 1 203 - -
Gma01g02049 251 Gene3D - 6 199 IPR027417 -
Gma01g02049 251 SMART ras_sub_4 7 173 - -
Gma01g02049 251 ProSiteProfiles small GTPase Rho family profile. 3 176 - -
Gma01g02049 251 ProSiteProfiles small GTPase Rab1 family profile. 1 228 - -
Gma01g02049 251 SMART rab_sub_5 10 173 - -
Gma01g02049 251 TIGRFAM small_GTP: small GTP-binding protein domain 9 166 IPR005225 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g02049 Gma-Chr1 55843675 55849258 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g02049 K07893 - gmx:100527651 377.481
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g02049 01 55843675 55849258 Gma01g02049 01 55843675 55849258 ECH