Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g02043 ATGCTTCGTCACCATTCGTCAATCTTCTCGCGGATTTTGAAGTCTTCATTTCGCAATGGGTGGCACGACGAGTCTCTGCTTCTACATTACCTATCCAATGGGTGGCACGACGACGCGCGAAACCTCCTCCAAAATTCCTCCGGAGGTGACCTCCACTCGCACGTCGTTCGCTGGACCTCGCTACTCTCCAACTTCTCCCGCCACGGTTTCGTGGCCGAAGCTCGCACACTCTTCGACATAATGCCCTACAGAAACCTCGTCTCTTACAACGCCATGTTGTCCGCGTACCTCCGCTCCGGCATGCTTGACGAGGCTTCCCGCTTCTTCGACACCATGCCGAAGAGGAACGTCGTGTCTTGGACCGTAATGCTTGGTGGGTTCTCAGATGCCGGGAGGATCGAGGATCGAGGATCGAAGATGCGAAGAAGATGTTTGATGAAATGCCTGAGAGAAATGTCGTTTCATGGAACGCGATGGTGGTGGCGTTTAGAGGAAGCGATGATGGTTTTTGAGGAGACTCCTTATAAGAATGTGGTTTCATGGAATGCTATGATCGCGGGGTATGTTGAGAGAGGGAGAATGGATGAGGCAAGAGAATTGTTTGAGAAGATGGAGTTTAGGAATGTGGTTACTTGGACTAGCATGATATCTGGTTATTGCCGTGAGGGAAATTTAGAGGGGGCTTATTGTTTGTTCCGGGCTATGCCGGAGAAAAATGTTGTTTCTTGGACTGCTATGATTGGTGGCTTTGCTTGGAATGGCTTTTATGAAGAGGCATTGTTGCTTTTTCTTGAGATGTTGAGAGTTTCTGATGCAAAGCCCAATGATGAGACCTTTGTTTCTCTTGTTTATGCTTGTGGTGGTTTGGGTTTTTCTTGCATTGGCAAGCAGTTACATGCTCAGCTGATTGTTAACAACTGGGGGATTGATGATTATGATGGTAGGTTGCGAAGAGGTCTTGTTAGGATGTACTCTGGATTTGGTCTTATGGACTCTGCACACAATGTGTTTGAAGGTAATGTGAAAGATTGTGATGATCAGTGTTTTAATTCCATGATAAATGGTTATGTTCAGGCCGGTCAGCTGGAAAGAGCTCAAGAGTTGTTTGACATGGTACCTGTTCGGAACAAGGTTGCGTCCACCTGCATGATTGCTGGCTATCTTAGTGCTGGCCAAGTACTAAAGGCTTGGAATTTGTTTAATGACATGCCTGATAGGGATTCCATTACGTGGACTGAGATGATTTATGGGTATGTGCAGAATGAGCTCATTGCTGAAGCCTTCTGCTTGTTTGCTGAGATGATGGCTCATGGTGTTTCTCCTATGAGTTCTACATATGCTGTTCTATTTGGAGCCATGGGTTCAGTTGCTTATCTTGATCAGGGGCGACAATTACATGGAAAGGTGAAGGAAGCAGAGGAGTTTGTCTTGAGGCTACCAGTTGAACCAAATCATGCCATTTGGGGAGCATTGATTGGAGTATGTGGGTTTAGTAAAACAAATGCAGATGTTGCTAGGCGTGCGGCCAAACGACTGTTTGAGTTGGAACCTTTAAATGCACCAGGCCATGTGGTCCTTTGTAACATATATGCCGCAAATGATAGGCATATTGAGGATACTAGTTTAAGAAAAGAAATGAGGATGAAAGGTGTGAGGAAGGCACCCGGATGTAGTTGGATATTGGTGAGGGGGGCAGTTCATATTTTCTTCTCAGACAACAAATTACATCTGCGTGTTTAA 1740 0.4603 MLRHHSSIFSRILKSSFRNGWHDESLLLHYLSNGWHDDARNLLQNSSGGDLHSHVVRWTSLLSNFSRHGFVAEARTLFDIMPYRNLVSYNAMLSAYLRSGMLDEASRFFDTMPKRNVVSWTVMLGGFSDAGRIEDRGSKMRRRCLMKCLREMSFHGTRWWWRLEEAMMVFEETPYKNVVSWNAMIAGYVERGRMDEARELFEKMEFRNVVTWTSMISGYCREGNLEGAYCLFRAMPEKNVVSWTAMIGGFAWNGFYEEALLLFLEMLRVSDAKPNDETFVSLVYACGGLGFSCIGKQLHAQLIVNNWGIDDYDGRLRRGLVRMYSGFGLMDSAHNVFEGNVKDCDDQCFNSMINGYVQAGQLERAQELFDMVPVRNKVASTCMIAGYLSAGQVLKAWNLFNDMPDRDSITWTEMIYGYVQNELIAEAFCLFAEMMAHGVSPMSSTYAVLFGAMGSVAYLDQGRQLHGKVKEAEEFVLRLPVEPNHAIWGALIGVCGFSKTNADVARRAAKRLFELEPLNAPGHVVLCNIYAANDRHIEDTSLRKEMRMKGVRKAPGCSWILVRGAVHIFFSDNKLHLRV 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g02043 579 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 85 119 IPR002885 -
Gma01g02043 579 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 345 379 IPR002885 -
Gma01g02043 579 Pfam PPR repeat family 407 453 IPR002885 -
Gma01g02043 579 Pfam PPR repeat family 176 209 IPR002885 -
Gma01g02043 579 Pfam PPR repeat family 85 127 IPR002885 -
Gma01g02043 579 TIGRFAM PPR: pentatricopeptide repeat domain 241 275 IPR002885 -
Gma01g02043 579 TIGRFAM PPR: pentatricopeptide repeat domain 348 371 IPR002885 -
Gma01g02043 579 TIGRFAM PPR: pentatricopeptide repeat domain 87 118 IPR002885 -
Gma01g02043 579 TIGRFAM PPR: pentatricopeptide repeat domain 179 209 IPR002885 -
Gma01g02043 579 TIGRFAM PPR: pentatricopeptide repeat domain 381 406 IPR002885 -
Gma01g02043 579 TIGRFAM PPR: pentatricopeptide repeat domain 210 241 IPR002885 -
Gma01g02043 579 TIGRFAM PPR: pentatricopeptide repeat domain 409 441 IPR002885 -
Gma01g02043 579 Gene3D Tetratricopeptide repeat domain 206 290 IPR011990 GO:0005515
Gma01g02043 579 Gene3D Tetratricopeptide repeat domain 318 373 IPR011990 GO:0005515
Gma01g02043 579 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 407 441 IPR002885 -
Gma01g02043 579 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 467 570 - -
Gma01g02043 579 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 81 178 - -
Gma01g02043 579 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 241 467 - -
Gma01g02043 579 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 174 241 - -
Gma01g02043 579 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 239 274 IPR002885 -
Gma01g02043 579 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 241 467 - -
Gma01g02043 579 Pfam PPR repeat 241 268 IPR002885 -
Gma01g02043 579 Pfam PPR repeat 210 240 IPR002885 -
Gma01g02043 579 Pfam PPR repeat 381 406 IPR002885 -
Gma01g02043 579 Pfam PPR repeat 348 371 IPR002885 -
Gma01g02043 579 Pfam PPR repeat 58 84 IPR002885 -
Gma01g02043 579 Gene3D Tetratricopeptide repeat domain 3 161 IPR011990 GO:0005515
Gma01g02043 579 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 25 88 - -
Gma01g02043 579 Pfam E motif 501 560 IPR046848 -
Gma01g02043 579 Gene3D Tetratricopeptide repeat domain 374 476 IPR011990 GO:0005515
Gma01g02043 579 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 174 241 - -
Gma01g02043 579 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 177 211 IPR002885 -
Gma01g02043 579 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 81 178 - -
Gma01g02043 579 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 467 570 - -
Gma01g02043 579 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 25 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g02043 Gma-Chr1 55822541 55824727 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g02043 67 576 Glycoside Hydrolase AT3G49170 23.601 3.32e-41 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g02043 - - gmx:102662400 827.78