Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g01730 ATGGGGACTCTCTGCTTCCCTCTATTTGCGACCATGGCAATTTGGGGGCTATTGTTAGGAGCAGAATCAAAAACACATGTCGGAGATGCAGAGGTTCTGAAGGAGCTGAAGCAAGGTTTGGAGCCTGGTTCGGTGAAGCCAGGCTCGTGCGTGAGCTCCTGGGACTTCACCTTGGACCCATGCGACAACCTTTTCGGCGACAAGTTCACGTGTGGCTTCAGATGCGACGTCGTCGTTTCGGGGCTGAGTCGAGTCACGGAACTCGCCTTAGACCAAGCTGGTTACTCTGGCTCCCTCTCCTTCACTTGGAACCTTCCTTATCTACAAACTCTCGATCTCTCCAACAACTACTTCTCCGGTCAAATTCCATATTCCTTCTCAAATCTCACTCGTCTGAGCCGACTCAGTCTCTCGTCCAACTCGTTCTCCGGCGAGATACCCTCTTCTCTCGGCACACTCTCCAACCTCCAAGAGCTTTACCTCGACAACAACAACCTGCGAGGAACAATCCCACAAAGTTTCGACAACCTGGCCAACCTTAAAAGACTCGAACTCCAGTCAAACAAACTCAACACCCGCCTTCCAAACCTGGGGTCCCTAAGAAACCTTAAATTTCTCTACCTAAGCGACAACTCCGTCACTGGAACATTGCCGGCTTCGCTCCCTGTTTCCTTGGTTCAGATTTCACTCAGGAACAACAACTTAAGCGGTGTCTTAGTTGGTGAAAGTTTCAAGAGCTTGACGAGGTTGCAGGTGGTGGATTTCAGCTCCAACCAATTGAGTGGTGCTGTTCCCTCTGTTTTCTTCCAGCTTCCGTCGTTGCAGCAGTTGACACTGTCCTTCAACGAATTCACGAATCTCGAAGCGCCTTATAAGGGAACGGAATCTCAGAGCGGGCTTGTAGCGGTTGATCTGAGCAACAACAGGCTTAAGGGGTTTTTGCCGTCGTTCATGGCGGTGATGCCGAAGCTTTCGTCGTTATCGTTGGAGAACAACGAGTTCACGGGGAGAATACCGACCCAGTTTGGGGTGAAAACGGTGTTTCCCGAAAAGGGGGTGTCTTCGTTCGGGAGGCTTCTGTTAGGTGGGAATTACTTGCTGGGAGGGATACCTCGACCCTTGTTAGCGCTGAAACGCGATTCTGCGAACGTGAGTTTGGTTGATAACTGCTTATACAGGTGCCCTCATAGTTTCTTTTTCTGCCAGGGTGGCCAACAGAAGTCCTTGGCACAGTGTAATAGATTTAGCCCTGCCTCCACTCCTTAA 1266 0.5071 MGTLCFPLFATMAIWGLLLGAESKTHVGDAEVLKELKQGLEPGSVKPGSCVSSWDFTLDPCDNLFGDKFTCGFRCDVVVSGLSRVTELALDQAGYSGSLSFTWNLPYLQTLDLSNNYFSGQIPYSFSNLTRLSRLSLSSNSFSGEIPSSLGTLSNLQELYLDNNNLRGTIPQSFDNLANLKRLELQSNKLNTRLPNLGSLRNLKFLYLSDNSVTGTLPASLPVSLVQISLRNNNLSGVLVGESFKSLTRLQVVDFSSNQLSGAVPSVFFQLPSLQQLTLSFNEFTNLEAPYKGTESQSGLVAVDLSNNRLKGFLPSFMAVMPKLSSLSLENNEFTGRIPTQFGVKTVFPEKGVSSFGRLLLGGNYLLGGIPRPLLALKRDSANVSLVDNCLYRCPHSFFFCQGGQQKSLAQCNRFSPASTP 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g01730 421 Pfam Leucine Rich Repeat 108 129 IPR001611 GO:0005515
Gma01g01730 421 PANTHER LEUCINE-RICH REPEAT (LRR) FAMILY PROTEIN 6 418 - -
Gma01g01730 421 PANTHER LEUCINE-RICH REPEAT (LRR) FAMILY PROTEIN 6 418 - -
Gma01g01730 421 SMART LRR_typ_2 153 176 IPR003591 -
Gma01g01730 421 SMART LRR_typ_2 105 128 IPR003591 -
Gma01g01730 421 SMART LRR_typ_2 177 200 IPR003591 -
Gma01g01730 421 SMART LRR_typ_2 271 297 IPR003591 -
Gma01g01730 421 SMART LRR_typ_2 321 345 IPR003591 -
Gma01g01730 421 SMART LRR_typ_2 247 270 IPR003591 -
Gma01g01730 421 ProSiteProfiles Leucine-rich repeat profile. 179 201 IPR001611 GO:0005515
Gma01g01730 421 SUPERFAMILY L domain-like 80 344 - -
Gma01g01730 421 Gene3D Ribonuclease Inhibitor 293 395 IPR032675 -
Gma01g01730 421 Gene3D Ribonuclease Inhibitor 28 195 IPR032675 -
Gma01g01730 421 Pfam Leucine rich repeat 154 212 IPR001611 GO:0005515
Gma01g01730 421 Pfam Leucine rich repeat 225 283 IPR001611 GO:0005515
Gma01g01730 421 Gene3D Ribonuclease Inhibitor 196 292 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g01730 Gma-Chr1 52994247 52995648 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g01730 45 379 Receptor kinase-like Gene Family AT3G28890 34.897 8.41e-37 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g01730 - - gmx:100811366 809.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g01730 01 52994247 52995648 Gma01g01730 01 52994247 52995648 ECH