LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma01g01687	ATGGCAAAGAAAGTGACTATAGTTTCACATTGTTTCTCTGCTTTTCTCCTGTTTTATTTATGTGGGACAGTAGTTTGTGTCAAGTACAATACTGGAGCTAGTGTTGTGCCAGGCAAATTGAATGTTCATCTCATTGCTCATTCCCATGACGATGTTGGTTGGCTCAAAACCGTTGACCAATACTATGTTGGGTCCAACAATAGTATTCAAGGTGCATGTGTGGAGAATGTGCTGGACTCGGTGGTAGTGTCCCTTCAGCTTAACCAAAACAGAAAGTTTGTGTTCGCTGAGATGGCTTTTTTCCATAGATGGTGGGTGGAACAAACTCCACAGACACAGGTGCAAGTGAGAAAGCTTGTGGATGCTGGCCAGCTAGAATTTATAAATGGTGGTTGGTGCATGCATGACGAAGCCACGACTCACTACATAGACATGATTGATCAAACGACTCTTGGTCACCGCTTCATCAAAAACCAATTCAACAAGGTCCCTCGTGCAGGGTGGCAGATTGATCCCTTTGGACACTCTGCTGTTCAGGCTTACTTGCTTGGTGCTGAGCTTGGTTTTGATTCTGTGCACTTCGCTAGGATTGATTATCAGGACAGAGCTAAGCGCAAAGTTGATAAGACTCTTGAAGTTGTGTGGCGAAGCTCCAAGACATTTGGCTCTTCAGCCCAGATTTTTGCCAATGCTTTTCCTGTTCATTATAGTCCCCCAAGTGGTTTTCATTTTGAAATCAATGATGACTTTGTTCCCGTACAGGATGATCCCCTTCTATTTGATTACAATGTTGAACAGCGAGTCAAGGACTTCATTGCTGCTGCTATTACACAAGCAAATGTGACTAGGACGAACCATATTATGTGGACAATGGGCGATGATTTCCAGTACCAAAATGCAGAGAGTTGGTTCAAACAAATGGATAAACTAATTCACTATGTTAATAAGGATGGCAGAGTGAATGCTTTATATTCTACTCCATCTATTTATACCGATGCAAAAAATGCTGCAAATCAACCATGGCCCCTGAAAACTGATGATTACTTCCCGTATGCGGATGGACCAAATGCTTATTGGACAGGCTATTTCACTAGTCGGCCAGCGTTTAAGCGATATGTTAGGATCCTTAGTGGATACTATTTGGCAGCACGACAACTTGAATTTTTTGCTGGAAAGAAATCCACTGTAGGCCACACTATAGACCTTGGAGATGCTCTCGGCGTTGCACAGCATCATGATGCTGTCTCTGGCACTGCCAAGCAACACACAACTAATGACTATGCAAAACGACTTGCTATTGGAGCCTCAAGGGCTGAAGCTGTTGTTAGTTCTTCTTTGTATTGTCTTACTAGCAAGAAACTAGGGGTTCAATGCTCAGCACCTACATCGGCATTTTCCCAGTGTCAATTACTCAATATCAGTTACTGCCCACCAACAGAAGACGGTATTCCACAAGCGAAGAGTTTGGTATTAGTGGTGTATAACCCACTTGGATGGAATCGCAGTGACATTGTTAGAATACCAGTTAATGACGCAAATCTTGTTGTAAAAGATTCATTGGGAAATAACATTGAAACACAATATATAGAAGTGGATAATGTTACAGCAAATTTAAGAGAATTCTATGTCAAAGTTTATGTGGGAGTGTCACCCCAACAAGCCCCAAAGTACTGGCTTCTATTTCAGGCTTCTGTACCTCCACTTGGATGGAGTACGTATTTCATTTCTAAAACAGCAAAAAAAGGCAAAAACAGGATTGGATTTCTCTCATACCAAAGCAGTCAAAACAAAGATACCATTGAAGTAGGTCCGGGAAATTTAAAGCTGTCATTTTCTTCAGAGTCTGGACAACTCATACGGATGCATAATTCCAAAACTGGAGTAACTGTACCAATTCAGCAAAGCTATCTCTGGTATAGTTCCAGTCAAGGTGAAGGTCAGGTATGTGATTTTGTTTTCTACACAACACTTATTCTAGTAACAAATAAATATAGTACAGAGTATGTTGCAATATCAGATTTGTTATCTCTCCAGGATTCTGGTGCATATATATTTCGGCCTCATACCCCTCCAAATATTGTTTCAAGATCAGTGCCCTTCAAGATAATCCGCGGACCATTAGTTGATGAGGTTCATCAGGAGTTTAGTTCTTGGATTTACCAGGTTACTAGGGTCTATAAAGACAAAGAGCATGCAGAGATTGAATACACTATTGGTCCAATTCCTATAGAGGATGGAATTGGAAAAGAGGTGATCACCCAAATGACAGCAAATATGGTTACAGACAAAGAGTTCTATACTGACTCTAATGGAAGAGATTTTTTGAAACGGGTTCGAGATCATAGGGATGATTGGCCACTTCAAGTTCATGAACCAGTAGCAGGCAACTATTATCCACTCAATCTTGGAATTTATGTTAAGGATAAGAAATCTGAATTGTCGGTCTTAGTTGATCGGGCCACTGGAGGAGGCAGTATCAAAGATGGTCAGGTGGAACTTATGCTTCATAGGCGCATGCTCTTTGATGATGGCAGAGGAGTAGACGAAGGTCTTGATGAACTAGTGTGCCAAAATGATAGATGTCAAGGACTAACAGTAAGAGGAAATTATTATGTGGGCATCCACAAACTTGGAGCTGGTTCACACTGGCGCCGTACAACTGGTCAGGAAGTTTATTCACCACTATTATTGGCTTTTGCACATGAGGTATTACTTAACTGTAGTTTAGTTACTTCATGGATTAGTCTTATCCATATTACATATTCTAAGATATCTATTGATCAGGACTTAGGAAACTGGAAGGCCTTTCATGTGACCAGAGGAACTGTCATTGATCCTAATTACAACTTACCTCCCAATGTTGCTCTGATAACTCTTGAGGTGTTGGATAATGGAATGGTGCTTCTCCGTTTGGCACATCTATATGAGGCTGGTGAAGATGCTCAGCTTTCAACTTTGACCAAAGTTGAATTGAAGAAAATGTTTGCCACAAAAATGATAAGGGGATTGATTGAGGTTAGTTTATCAGCAAATCAAGAGAAGGAAAAAATGAAGAAGAAAACATGGAACGTTGCAGGGGACAAGGGACAAGGGTCTAAATCAGTTAGGGGTGGCCCTGTCAGCCATATTAATCTCGTAGTTGAGCTTGGTCCCATGGAAATACGTTCTTTCCTGTTGAAATTCTAA	3186	0.4105	MAKKVTIVSHCFSAFLLFYLCGTVVCVKYNTGASVVPGKLNVHLIAHSHDDVGWLKTVDQYYVGSNNSIQGACVENVLDSVVVSLQLNQNRKFVFAEMAFFHRWWVEQTPQTQVQVRKLVDAGQLEFINGGWCMHDEATTHYIDMIDQTTLGHRFIKNQFNKVPRAGWQIDPFGHSAVQAYLLGAELGFDSVHFARIDYQDRAKRKVDKTLEVVWRSSKTFGSSAQIFANAFPVHYSPPSGFHFEINDDFVPVQDDPLLFDYNVEQRVKDFIAAAITQANVTRTNHIMWTMGDDFQYQNAESWFKQMDKLIHYVNKDGRVNALYSTPSIYTDAKNAANQPWPLKTDDYFPYADGPNAYWTGYFTSRPAFKRYVRILSGYYLAARQLEFFAGKKSTVGHTIDLGDALGVAQHHDAVSGTAKQHTTNDYAKRLAIGASRAEAVVSSSLYCLTSKKLGVQCSAPTSAFSQCQLLNISYCPPTEDGIPQAKSLVLVVYNPLGWNRSDIVRIPVNDANLVVKDSLGNNIETQYIEVDNVTANLREFYVKVYVGVSPQQAPKYWLLFQASVPPLGWSTYFISKTAKKGKNRIGFLSYQSSQNKDTIEVGPGNLKLSFSSESGQLIRMHNSKTGVTVPIQQSYLWYSSSQGEGQVCDFVFYTTLILVTNKYSTEYVAISDLLSLQDSGAYIFRPHTPPNIVSRSVPFKIIRGPLVDEVHQEFSSWIYQVTRVYKDKEHAEIEYTIGPIPIEDGIGKEVITQMTANMVTDKEFYTDSNGRDFLKRVRDHRDDWPLQVHEPVAGNYYPLNLGIYVKDKKSELSVLVDRATGGGSIKDGQVELMLHRRMLFDDGRGVDEGLDELVCQNDRCQGLTVRGNYYVGIHKLGAGSHWRRTTGQEVYSPLLLAFAHEVLLNCSLVTSWISLIHITYSKISIDQDLGNWKAFHVTRGTVIDPNYNLPPNVALITLEVLDNGMVLLRLAHLYEAGEDAQLSTLTKVELKKMFATKMIRGLIEVSLSANQEKEKMKKKTWNVAGDKGQGSKSVRGGPVSHINLVVELGPMEIRSFLLKF	1061

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gma01g01687	1061	Gene3D	-	467	579	IPR013780	-
	Gma01g01687	1061	PANTHER	ALPHA-MANNOSIDASE	667	1061	-	-
	Gma01g01687	1061	SUPERFAMILY	Galactose mutarotase-like	463	1061	IPR011013	GO:0003824\|GO:0005975\|GO:0030246
	Gma01g01687	1061	SUPERFAMILY	Families 57/38 glycoside transferase middle domain	356	452	IPR028995	-
	Gma01g01687	1061	Pfam	Glycosyl hydrolases family 38 C-terminal domain	604	845	IPR011682	GO:0004559\|GO:0006013
	Gma01g01687	1061	Pfam	Alpha mannosidase middle domain	357	448	IPR015341	GO:0004559\|GO:0006013
	Gma01g01687	1061	PANTHER	ALPHA-MANNOSIDASE	7	647	-	-
	Gma01g01687	1061	PANTHER	ALPHA-MANNOSIDASE	667	1061	-	-
	Gma01g01687	1061	SUPERFAMILY	Glycoside hydrolase/deacetylase	29	355	IPR011330	GO:0005975
	Gma01g01687	1061	Gene3D	Glycoside hydrolase family 38, central domain	321	398	IPR037094	GO:0004559\|GO:0006013
	Gma01g01687	1061	Gene3D	Glycoside hydrolase 38, N terminal domain	40	320	IPR027291	-
	Gma01g01687	1061	PANTHER	ALPHA-MANNOSIDASE	7	647	-	-
	Gma01g01687	1061	SMART	Alpha_mann_mid_2	357	431	IPR015341	GO:0004559\|GO:0006013
	Gma01g01687	1061	Pfam	Glycosyl hydrolases family 38 N-terminal domain	41	352	IPR000602	GO:0004559\|GO:0006013
	Gma01g01687	1061	Pfam	Glycosyl hydrolases family 38 C-terminal beta sandwich domain	953	1058	IPR041147	-
	Gma01g01687	1061	Gene3D	Glycoside hydrolase family 38, central domain	399	454	IPR037094	GO:0004559\|GO:0006013
	Gma01g01687	1061	Gene3D	-	944	1061	-	-
	Gma01g01687	1061	Gene3D	-	599	893	-	-
	Gma01g01687	1061	CDD	GH38N_AMII_LAM_like	40	316	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma01g01687	Gma-Chr1	52527330	52535290	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gma01g01687	11	1012	Glycoside Hydrolase	AT3G26720	57.806	0.0	1174

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma01g01687	K01191		-	gmx:100806041	2015.35

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gma01g01687	01	52527330	52535290	Gma01g01687	01	52527330	52535290	ECH