Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g01627 ATGACCGAACCTCAAGACCCCTTCTCCTACCCTCCCATTGACCCCGTCAACTTCGATCTCATCATCGTCGGCACCGCCCTATCGGAATCCGTCATCGCCGCCGCCGCCTCCGCCGTCGGCAAAACCATCCTCCACCTCGACCCCAACTCCTTCTACGGCAGCCACTTCGCTTCTCTCTCCCTCCACGATCTCACTTCCTACCTCACTTCCCCGCACTCCCTCCCCTCCGCCGCAACCGCCGCCGCATCCTCCGACTCTGACGACATCGTTGTCGTCGACCTCGTCCACCAACCCCTCTGCACCGACGCGGAAACCGCGACCTACGATGAATCCGCGTTTCTCAGCGAAAATTCGCGAAAATTCAACATCGATTTGGGAGGTCCCAGGGCGCTGTTCTGCGCGGACAAGACGATCGATCTGTTGATGAAATCGGGCGCTGCGCAGTATTTGGAGTTCAAAGGAATCGACGAGAGCTTCGTCTATGAAGCGAACGCGGGTTTGGCGAACGTGCCGGATTCTCGAGGAGCGATTTTCAGAGACAAGAAGCTTTCGCTGAAGGAGAAGAACCAGTTGATGAGGTTCTTCAAGCTGGTTCAGCAGCACCTCGATGATACTCAGGAGGAGAAGATTCCCAAGGAGGATTTGGAGATTCCGTTTGTTAGTTTCTTGGAGAAGATGAAGTTGCCGCCTAAGATAAAATCGATTCTTTTGTATGCTATAGCCATGCTAGATTATGATCAAGACAACAACGAGGTTTGTGAAGAGTTACTTAAAACAAAAGATGGAATAGATTGTTTAGCTCAATACAGCTCATCTGTTGGAAGGTTTCCCAATGCTCCTGGGGCTTTGCTTTATCCTATTTATGGTGAAGGAGAACTACCACAGGCCTTTTGTCGTCGTGCTGCTGTCAAAGGTTGCATTTATGTTCTAAGAATGCCGGTTGTTTCGCTGCTTATGGATAAGGTTACTGGGTCTTATAAAGGTGTTAGATTAGCTTCAGGGCAGGATTTATACAGCCACCAACTAATCCTGGACCCATCCTTCACAATTCCATCACCGTTGTCTTTGTCTCTAGGAGATTTTCCCAGTGAAAGGCTCCAAATGTTGAGTCAGAGAGATATTAAAGGAATGGTGGCTAGGGGAATATGTATCACAAGGAGTTCAATAAAGCCAGATGTATCAAGTTGCTCAGTGGTGTATCCTCCTAGATCTTTGTATCCTGAACAGGTGACTTCAATCAAAGCTCTTCAGATAGGATCAAATCTCGCTGTTTGTCCTGCAGGAACCTTTATTTTATACCTTTCCACTTTGTGCAATGATGCCGATGAAGGAAAGAAGCTACTAAAAGCAGCCATGAATGCTCTACTTACGCTGCCTGTATCGGGAAACTCTGAAAGCATTCCAAGTGTTCAAAGTGACAGTGAAGATATAAAACCCATTGTGCTCTGGAGTGCATTTTATATTCAGAAATTAATTATGAGTAAATTTGAATTTATCAGCTCCACTCCTACACCGGATGGAAATCTGAACTACAATGCCCTTTTAGATGCGACCGAGAAGCTATTTAATCAGATGTACCCCAATGAAGAATTCTTTCCAAAGGCAACATCACCTGAAGATCCTACAGATGAGGATGATAATGGGTTAACTTTGGATAGCTAA 1662 0.4681 MTEPQDPFSYPPIDPVNFDLIIVGTALSESVIAAAASAVGKTILHLDPNSFYGSHFASLSLHDLTSYLTSPHSLPSAATAAASSDSDDIVVVDLVHQPLCTDAETATYDESAFLSENSRKFNIDLGGPRALFCADKTIDLLMKSGAAQYLEFKGIDESFVYEANAGLANVPDSRGAIFRDKKLSLKEKNQLMRFFKLVQQHLDDTQEEKIPKEDLEIPFVSFLEKMKLPPKIKSILLYAIAMLDYDQDNNEVCEELLKTKDGIDCLAQYSSSVGRFPNAPGALLYPIYGEGELPQAFCRRAAVKGCIYVLRMPVVSLLMDKVTGSYKGVRLASGQDLYSHQLILDPSFTIPSPLSLSLGDFPSERLQMLSQRDIKGMVARGICITRSSIKPDVSSCSVVYPPRSLYPEQVTSIKALQIGSNLAVCPAGTFILYLSTLCNDADEGKKLLKAAMNALLTLPVSGNSESIPSVQSDSEDIKPIVLWSAFYIQKLIMSKFEFISSTPTPDGNLNYNALLDATEKLFNQMYPNEEFFPKATSPEDPTDEDDNGLTLDS 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g01627 553 Gene3D - 15 531 IPR036188 -
Gma01g01627 553 PIRSF Rab_ger_ger_transf_A_euk 97 552 IPR001738 GO:0005968|GO:0006886|GO:0018344
Gma01g01627 553 PIRSF Rab_ger_ger_transf_A_euk 5 107 IPR001738 GO:0005968|GO:0006886|GO:0018344
Gma01g01627 553 Pfam GDP dissociation inhibitor 117 455 IPR018203 GO:0005092|GO:0007264
Gma01g01627 553 Pfam GDP dissociation inhibitor 17 67 IPR018203 GO:0005092|GO:0007264
Gma01g01627 553 PANTHER RAB GDP-DISSOCIATION INHIBITOR 14 540 IPR018203 GO:0005092|GO:0007264
Gma01g01627 553 PANTHER RAB PROTEINS GERANYLGERANYLTRANSFERASE COMPONENT A 14 540 - -
Gma01g01627 553 SUPERFAMILY FAD-linked reductases, C-terminal domain 375 489 - -
Gma01g01627 553 SUPERFAMILY FAD/NAD(P)-binding domain 16 351 IPR036188 -
Gma01g01627 553 Gene3D Guanine Nucleotide Dissociation Inhibitor, domain 1 170 282 - -
Gma01g01627 553 MobiDBLite consensus disorder prediction 531 553 - -
Gma01g01627 553 Gene3D Guanine Nucleotide Dissociation Inhibitor, domain 2 95 491 - -
Gma01g01627 553 PRINTS Rab GDI/REP protein family signature 19 37 IPR018203 GO:0005092|GO:0007264
Gma01g01627 553 PRINTS Rab GDI/REP protein family signature 37 54 IPR018203 GO:0005092|GO:0007264
Gma01g01627 553 PRINTS Rab GDI/REP protein family signature 137 153 IPR018203 GO:0005092|GO:0007264
Gma01g01627 553 PRINTS Rab GDI/REP protein family signature 187 202 IPR018203 GO:0005092|GO:0007264
Gma01g01627 553 PRINTS Rab GDI/REP protein family signature 289 310 IPR018203 GO:0005092|GO:0007264
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g01627 Gma-Chr1 51960014 51965920 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g01627 K23460 - gmx:100795946 1053.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g01627 01 51960014 51965920 Gma01g01627 01 51960014 51965920 ECH
Gma01g01627 01 51960014 51965920 Gma11g00784 11 6543480 6548445 GST