Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g01590 ATGGTACTCATCACTGCACCGGTGACAACAGTACCAACCCACCACCTATTCTTCGACGAAAACGTTGATTTAAAGAACAGCAAGCTACGTACTTTGCCTTCTCCCAACCATCAACTCGAGTTTCGACTACCCTTGCGCCACCCCATTCACAACTTCCCTAACCACACTTCCCCACAACCCCTTACTCAAACAACTACTTTCACTAAGAAGAAGAAAAAGAAGAAGAGAAAAGGGGCCACAACCTCTGACATATTGCACTTGATGGAAGCTCTACCCTTTCCCGTACCCATTGACATCTACACCTCTCTCATAAAAGAGTGCACTGTTTCCGGCGACCCAGAAACCGCCATTGAGTTGGCCACCCACATCTCCAAGAGCGGCATCAAACCCCCATTGCCCTTCCTCAATAGGATTCTCGTCATGTTCGTGTCGTGTGGTTTGTTGGAAAATGCGCGCCACATGTTTGACAAAATGCGTGTTAGGGACTTCAACACTTGGGCAACCTTGTTTGTTGCTTACTATAATAATGCCGATTACGAGGAGGCTACAAATGTTTTTGTTAACATGTTAACCCAATTGGGTATGATGCAATTTCCTCCGTGGATATGGGCTTGCCTTCTCAGGGCCTGTGCATGCACTGTGAATGTACCTTTAGGAATGCAAGTTCATGGATGGTTGTTGAAGTTGGGTACCTGTGATCATGTGCTTCTCAGCAGCTCCTTGATCAACTTTTACGGGAGATTCACATGCCTTGAAGATGCGAGTGTTGTCTTCGATGGGGTGTCGCGACATAACACGTTGACTTGGACGGCTAAAATTGTTAGTGGTTGCAGGGAAAGGCATTTCTCTGAGGTTTTTGACGACTTCAAGGAGATGGGAATGCGAGGGGTGAAGAAGGACTGCTTCACGTTTTCTAGTGTTCTCAAGGCATGTGGGAGGATGCTGAATCAGGAACGATGTGGTGAACAAGTCCATGTTGATGCTATCAAACTTGGGCTGGTCTCGGATCACTATGTGCAGTGTAGTTTGATTGCCATGTACGGAAGATGTGGGTTATTGGAAGATGCAAAACGGGTGTTTGAGATGAGCCAAGAGGAGAGAAAGGTTGATTGTTGGAATGCTATGCTTATGGGTTACATACAGAATGGTTTGTACATTGAAGCTGTTAAGTTTCTGTATCAGATGCAGGCAGCCGGAATGCAGCCCCGGGAATCTTTGCTTAAAAAATTAAGAATGGCTTGTGGAAGTATTAGCTACTCAAACATGAATTAA 1272 0.4568 MVLITAPVTTVPTHHLFFDENVDLKNSKLRTLPSPNHQLEFRLPLRHPIHNFPNHTSPQPLTQTTTFTKKKKKKKRKGATTSDILHLMEALPFPVPIDIYTSLIKECTVSGDPETAIELATHISKSGIKPPLPFLNRILVMFVSCGLLENARHMFDKMRVRDFNTWATLFVAYYNNADYEEATNVFVNMLTQLGMMQFPPWIWACLLRACACTVNVPLGMQVHGWLLKLGTCDHVLLSSSLINFYGRFTCLEDASVVFDGVSRHNTLTWTAKIVSGCRERHFSEVFDDFKEMGMRGVKKDCFTFSSVLKACGRMLNQERCGEQVHVDAIKLGLVSDHYVQCSLIAMYGRCGLLEDAKRVFEMSQEERKVDCWNAMLMGYIQNGLYIEAVKFLYQMQAAGMQPRESLLKKLRMACGSISYSNMN 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g01590 423 Pfam PPR repeat 342 364 IPR002885 -
Gma01g01590 423 Pfam PPR repeat 371 399 IPR002885 -
Gma01g01590 423 Pfam Pentatricopeptide repeat domain 84 143 IPR002885 -
Gma01g01590 423 MobiDBLite consensus disorder prediction 52 80 - -
Gma01g01590 423 TIGRFAM PPR: pentatricopeptide repeat domain 371 402 IPR002885 -
Gma01g01590 423 PANTHER PPR REPEAT PROTEIN 68 417 - -
Gma01g01590 423 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 96 130 IPR002885 -
Gma01g01590 423 Gene3D Tetratricopeptide repeat domain 269 421 IPR011990 GO:0005515
Gma01g01590 423 Gene3D Tetratricopeptide repeat domain 66 211 IPR011990 GO:0005515
Gma01g01590 423 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 368 402 IPR002885 -
Gma01g01590 423 PANTHER OS07G0578800 PROTEIN-RELATED 68 417 IPR045215 GO:0003723|GO:0009451
Gma01g01590 423 MobiDBLite consensus disorder prediction 52 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g01590 Gma-Chr1 51500785 51502056 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g01590 292 419 Glycoside Hydrolase AT3G49170 30.534 3.98e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g01590 - - gmx:100778405 845.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g01590 01 51500785 51502056 Gma01g01590 01 51500785 51502056 ECH