Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g01580 ATGGCGGATCGATTGACGCGTATTGCCATCGTCAGCAACGTCAGGTGCAAGCCCAAAAAGTTCCGTCAAGAGTGCAAGAAGAGTTGCCCCGTCGTCACAACCGAGAGGCTGTGTATTGAGGTTACTTCCGTGTCCAAGATTGCTTTCATTTCCGAGGAATTGTGCACTGGATGCGGTATTTGCGTTAAGATTATCAACTTGCCAAAGGACTTGGACAGGGATACTACTCATAGATATGGTCCTGATACTTTTAAGCTGCATAGGTTGCCGGTTCCGAGGCCTGGGCAGGTGCTTGGGTTGGTTGGGACAAATGGGATTGGGAAGTCCACTGCTCTTAAAGTTTTGGCCGGGAAATTGAAGCCGAATTTGGGTCGATTCACTAATCCCCCTGATTGGCAGGAAATTTTGACCTATTTTCGAGGATCTGAACTGCAGAATTACTTTACTCGGATTCTAGAAGATGATTTGAAGCCTGCAGACATCTATCTGATAGATGAGCCAAACAGAGTTATTGTTTATGAGGGTCAACCATCAATTGACTGTATTGCAAATTCTCCAGTCATTGTTGACTGGGATGAACGTTTTCTTATCACATCTTGA 600 0.4533 MADRLTRIAIVSNVRCKPKKFRQECKKSCPVVTTERLCIEVTSVSKIAFISEELCTGCGICVKIINLPKDLDRDTTHRYGPDTFKLHRLPVPRPGQVLGLVGTNGIGKSTALKVLAGKLKPNLGRFTNPPDWQEILTYFRGSELQNYFTRILEDDLKPADIYLIDEPNRVIVYEGQPSIDCIANSPVIVDWDERFLITS 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g01580 199 Pfam ABC transporter 94 127 IPR003439 GO:0005524
Gma01g01580 199 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 1 157 IPR013283 -
Gma01g01580 199 Gene3D - 1 179 IPR027417 -
Gma01g01580 199 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 73 168 IPR027417 -
Gma01g01580 199 Pfam Possible Fer4-like domain in RNase L inhibitor, RLI 6 36 IPR007209 -
Gma01g01580 199 PRINTS ABC transporter family E signature 24 39 IPR013283 -
Gma01g01580 199 PRINTS ABC transporter family E signature 71 91 IPR013283 -
Gma01g01580 199 PRINTS ABC transporter family E signature 132 148 IPR013283 -
Gma01g01580 199 PRINTS ABC transporter family E signature 99 124 IPR013283 -
Gma01g01580 199 PANTHER - 1 157 - -
Gma01g01580 199 SMART AAA_5 94 193 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g01580 Gma-Chr1 51373488 51375715 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g01580 K06174 - gmx:100797423 300.056
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g01580 01 51373488 51375715 Gma01g01580 01 51373488 51375715 ECH
Gma01g01580 01 51373488 51375715 Gma11g00830 11 6980457 6985816 GST