Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g01542 ATGGGTAATCCACGGAAACCGAGTACCGCCGACGAGCTTCACACGGCGGCAAGGTCCGGTGATCTCATCGCCGTTAACTCAATTTTGGCTTCAAATCCTTTGGCCGTTAATTCCAGAGATAAGCATTCCAGAACACCTCTACATTTAGCTGCATTTTCTGGGCAAGCAGAGGTAGTCATTTATCTCTGCAAGCAGAAGGCTGATGTTGGTGCTTCTGCAATGGATGACATGGCTGCAATACACTTTGCTTCACAGAAGGGACATTTAGAAGTTGTCCGCGCTCTACTTTCAGCTGGGGCCTCTCTCAAAGCCACCACCCGCAAAGGCATGACTTCATTACACTATGCTGTTCAAGGTTCCCATATGGAACTCGTCAAGTACTTGGCCAAGAAAGGGGCAAACCTTGGTGCCAAGACAAAGGCAGGAAAGACCCCTTTGGATCTTGCTACCAATGAAGAAATCCGCTCCTTTCTGGAGGAATATGAGAAGTCAGCAAAGAATGGAGAATTGGGAAAGAAAGACAAAGATAAAGCTGAAGAATCTGATCCAAAGACATCCACATTGGGATCTGAAGGTGATTTGAGTTCTGAACCTGCTGCAGCTGCTATTGATGAAGAAGACAATGTGGGAGAGAAGAGGAAGAAGGGTAATGAAGATGGCACAAGAGAAGAAGAGTCATCACAACCAAAAAAGGCTAGAGTTAACTTAAGTCATCTCCAAAGTTCCGACGATACCCAAGAAGAAAACCTGTAG 753 0.4595 MGNPRKPSTADELHTAARSGDLIAVNSILASNPLAVNSRDKHSRTPLHLAAFSGQAEVVIYLCKQKADVGASAMDDMAAIHFASQKGHLEVVRALLSAGASLKATTRKGMTSLHYAVQGSHMELVKYLAKKGANLGAKTKAGKTPLDLATNEEIRSFLEEYEKSAKNGELGKKDKDKAEESDPKTSTLGSEGDLSSEPAAAAIDEEDNVGEKRKKGNEDGTREEESSQPKKARVNLSHLQSSDDTQEENL 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g01542 250 MobiDBLite consensus disorder prediction 205 231 - -
Gma01g01542 250 ProSiteProfiles Ankyrin repeat region circular profile. 108 140 - -
Gma01g01542 250 SMART ANK_2a 42 71 IPR002110 GO:0005515
Gma01g01542 250 SMART ANK_2a 75 104 IPR002110 GO:0005515
Gma01g01542 250 SMART ANK_2a 108 137 IPR002110 GO:0005515
Gma01g01542 250 PANTHER - 1 248 - -
Gma01g01542 250 ProSiteProfiles Ankyrin repeat region circular profile. 75 104 - -
Gma01g01542 250 ProSiteProfiles Ankyrin repeat profile. 42 74 IPR002110 GO:0005515
Gma01g01542 250 PANTHER ANKYRIN REPEAT PROTEIN 1 248 - -
Gma01g01542 250 Gene3D - 6 182 IPR036770 -
Gma01g01542 250 Pfam Ankyrin repeats (3 copies) 13 71 IPR002110 GO:0005515
Gma01g01542 250 Pfam Ankyrin repeats (3 copies) 80 160 IPR002110 GO:0005515
Gma01g01542 250 ProSiteProfiles Ankyrin repeat profile. 75 107 IPR002110 GO:0005515
Gma01g01542 250 SUPERFAMILY Ankyrin repeat 13 153 IPR036770 -
Gma01g01542 250 ProSiteProfiles Ankyrin repeat region circular profile. 42 69 - -
Gma01g01542 250 MobiDBLite consensus disorder prediction 165 250 - -
Gma01g01542 250 MobiDBLite consensus disorder prediction 165 186 - -
Gma01g01542 250 ProSiteProfiles Ankyrin repeat profile. 108 140 IPR002110 GO:0005515
Gma01g01542 250 PRINTS Ankyrin repeat signature 43 58 IPR002110 GO:0005515
Gma01g01542 250 PRINTS Ankyrin repeat signature 91 105 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g01542 Gma-Chr1 50948141 50950036 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g01542 11 150 Miscellaneous Gene Families AT5G02620 32.168 5.86e-15 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g01542 - - gmx:100812821 481.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g01542 01 50948141 50950036 Gma01g01542 01 50948141 50950036 ECH
Gma01g01542 01 50948141 50950036 Gma09g01987 09 45489590 45491508 GST