Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g01421 ATGTCCCAACTGAAGCCAATGTCGCATATAGACAGTGCCCCTTCGACCCCAGGGAAGTTCAAGATGGAGAAAGCTTCGTACTTCAACCGCGTGCGGTGGCACACCTCGCTGGCGAAGCTCGCAGTGTGGTCCTTCGTATTCCTGGGCGCGATCTTGATCTTTTTCCTCCGGTCGCCGGCGTCGTCGCCGGTTCCGGCGGACCTCTCCCGGCGGTCTCTGCGGACCTACAACTGGGGCGGACCCGTCTGGGAGAAACGGGTCCGGGCCTCCGCCCAGATCCGTTCCCGAAACGGGTTCGCCGTTTTGGTCACCGGGGCCGCCGGTTTCGTCGGCACCCATGTCTCCGCGGCCCTCAAACGCCGCGGAGACGGGGTGCTGGGACTTGATAATTTCAATGACTATTATGACCCTTCACTAAAGCGTGCACGCCAGGGACTCTTGGAGCGCTCTGGGGTGTACATAGTGGAGGGTGATATCAATGATGAAGCACTCTTGAGGAAGCTTTTTGAGGTTGTGCCTTTCACTCATGTGATGCACTTGGCTGCTCAGGCTGGTGTGAGGTATGCCATGGAGAATCCTGGCTCTTATGTGCATAGCAACATTGCTGGATTTGTGAATTTGCTTGAGGTTTGTAAGAGTGTGAATCCACAACCTGCTATTGTGTGGGCCTCTAGTAGCTCAGTTTATGGACTCAACACTAAGGTTCCATTCTCTGAGAGGGATAGGACTGATCAGCCTGCTAGTTTGTATGCTGCAACTAAGAAGGCTGGTGAGGAGATTGCTCACACTTATAACCATATCTATGGTCTTTCATTGACTGGCTTGAGGTTCTTCACTGTTTATGGCCCTTGGGGTAGGCCTGATATGGCTTACTTCTTCTTTACTAGGGATCTTTTGAAGGGGAAGTCCATCCCTATATTTGAGGCCGCAAATCATGGAACCGTTGCGAGGGATTTTACTTACATTGATGATATTGTGAGGGGTTGTTTGGGGGCTTTGGATACTGCAGAGAAGAGCACAGGAAGTGGGGGGAAGAAGAGGGGGCCGGCACAGTTGAGGATTTTCAATTTGGGGAACACTTCGCCTGTTCCAGTTAGTGATCTTGTGAGCATTTTGGAGAGGCTTCTGAAGGTTAAGGCGAAGAGGAACATAATGAAGTTGCCGCGGAATGGGGATGTGCAGTTTACTCATGCCAACATTAGCTATGCTCAGATGGAGCTTGGGTACAAGCCGACCACGGATCTGCAGAGTGGTTTGAAGAAATTCGTGCGGTGGTACCTGAATTACTATTCTGGCGGGAAGAAAGCTCGTTTCTCTGTTCGTTGTACGATCACCGCGTTTCATGTGTCAAGGATGATGCCATATAAGGAGGAAGTAGGAACCTTGTTTCCTGCACTGGGGAAGTTTTGTTGTTGGTGGAGATTAAGGCCCAGGCACCGATTTGCTGTGTCCAAGAAAACCAGATACATCATATTCTCTTTTATTCTTTTTTTCTTGAATGTAATTGTTGTAGTTTTAGAAATGTAG 1527 0.5029 MSQLKPMSHIDSAPSTPGKFKMEKASYFNRVRWHTSLAKLAVWSFVFLGAILIFFLRSPASSPVPADLSRRSLRTYNWGGPVWEKRVRASAQIRSRNGFAVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKRARQGLLERSGVYIVEGDINDEALLRKLFEVVPFTHVMHLAAQAGVRYAMENPGSYVHSNIAGFVNLLEVCKSVNPQPAIVWASSSSVYGLNTKVPFSERDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDLLKGKSIPIFEAANHGTVARDFTYIDDIVRGCLGALDTAEKSTGSGGKKRGPAQLRIFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLPRNGDVQFTHANISYAQMELGYKPTTDLQSGLKKFVRWYLNYYSGGKKARFSVRCTITAFHVSRMMPYKEEVGTLFPALGKFCCWWRLRPRHRFAVSKKTRYIIFSFILFFLNVIVVVLEM 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g01421 508 Pfam NAD dependent epimerase/dehydratase family 101 338 IPR001509 -
Gma01g01421 508 Gene3D - 100 432 - -
Gma01g01421 508 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 98 433 IPR036291 -
Gma01g01421 508 PANTHER UDP-GLUCURONATE 4-EPIMERASE 2-RELATED 10 436 - -
Gma01g01421 508 PRINTS Nucleotide sugar epimerase signature 392 409 - -
Gma01g01421 508 PRINTS Nucleotide sugar epimerase signature 352 367 - -
Gma01g01421 508 PRINTS Nucleotide sugar epimerase signature 127 143 - -
Gma01g01421 508 PRINTS Nucleotide sugar epimerase signature 317 332 - -
Gma01g01421 508 PANTHER EPIMERASE-RELATED 10 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g01421 Gma-Chr1 48928564 48930169 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g01421 4 436 Miscellaneous Gene Families AT4G00110 86.836 0.0 780
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g01421 K08679 - gmx:100788739 880.167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g01421 01 48928564 48930169 Gma01g01421 01 48928564 48930169 ECH