Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g00800 ATGGCTTCGCCCTTTCTCCCCGCCAAAACCAATTCCGCCACCCTCTCCTTCTCCGCCGCAGTCCCCGGCCGCCGCCTCCACTTCGCGGCGTCTCCGTCGCATTCCCCTCGACGGAGGTCCTCCCTGACGGTGAAGTCGAAGATCAGGGAGATCTTCATGCCCGCCCTCAGCTCCACCATGACGGAGGGAAAAATCGTCTCGTGGGTCAAGTCCGAGGGCGACGTCCTCTCCAAAGGTGACAGCGTCGTCGTCGTCGAGTCCGACAAGGCCGACATGGACGTCGAGACGTTCTACAATGGCATCCTCGCCGTCATCGTTGTCGCCGAGGGCCAGACCGCCCCCGTCGGTGCCCCCATCGGCCTCCTTGCGGAGACCGAGGCCGAAGTTGCCGAGGCCATGGCAGCCGCCAATTCTGCTCCAACTCCACCTCCCAAAGCTTCCGATACTTCTCCGGCGCCGGCACCGGCGCCGGAAGTCTCTGATTCACCACGTAAGGCGGTTGCAACACCGTATGCCAAGAAGCTCGCGAAGCAGCACAAAGTGAACATAGGTTCGGTTGTCGGGACTGGTCCGTTTGGAAGAGTCACTCCTGCTGACGTGGAGAAGGCCGCCGGTATTTTGCCGGCGGAGAGCAATGTAGCTCCGGCGGCGGTGGATTCGGCTCCACCGAAAGCTGCTGCTGCGGCTCCGGCGGCATCCTCGGCTTCAATTCCAGGTTCTAGTGTTGTGGCCTTTACGACAATGCAATCTGCGGTTGCGAAGAACATGGTGGAGAGTCTCTCTGTGCCGACGTTCCGTGTTGGGTACCCAGTTACCACTGATGCACTTGATGCTCTGTATGAGAAGGTGAGAAAAAAGGGTGTGACCATGACAGCGATTCTGGCCAAGGCAGCTGCAATGGCACTCGTTCAGCACCCAGTGGTGAATGCCTCGTGCAAAGATGGGAAGAACTTTGCCTATAATAGTAACATTAACATTGCTGTTGCTGTGGCAACCAATGGTGGTTTGATTACACCGGTTCTTCAGGATGCAGATAAGTTGGACTTGTATCTTTTGTCCCAAAAATGGAAAGAACTAGTGGAAAAAGCTCGTGCCAAGCAATTGCAACCTCATGAATATAATTCAGGAACTTTCACACTTTCAAATTTGGGAATGTTTGGAGTTGACAGGTTTGACGCCATACTTCCTCCAGGCCAGGGGGCTATCATGGCGGTTGGAGCATCAAAACCTACTGTCCTAGCAGATAAGGATGGTTTCTTTACTGTAAAAAGTAAAATGCTGATCGTTGCGGAAGCAGAGCCATTTGGAAGTGACAACAATGGCATAGACGGTGAGAAGGAAGGGGTGGTCGAGCTCAATGTCCCTGACCTTGGTGACAAACACAACGAAAAGGGATAA 1398 0.5479 MASPFLPAKTNSATLSFSAAVPGRRLHFAASPSHSPRRRSSLTVKSKIREIFMPALSSTMTEGKIVSWVKSEGDVLSKGDSVVVVESDKADMDVETFYNGILAVIVVAEGQTAPVGAPIGLLAETEAEVAEAMAAANSAPTPPPKASDTSPAPAPAPEVSDSPRKAVATPYAKKLAKQHKVNIGSVVGTGPFGRVTPADVEKAAGILPAESNVAPAAVDSAPPKAAAAAPAASSASIPGSSVVAFTTMQSAVAKNMVESLSVPTFRVGYPVTTDALDALYEKVRKKGVTMTAILAKAAAMALVQHPVVNASCKDGKNFAYNSNINIAVAVATNGGLITPVLQDADKLDLYLLSQKWKELVEKARAKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASKPTVLADKDGFFTVKSKMLIVAEAEPFGSDNNGIDGEKEGVVELNVPDLGDKHNEKG 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g00800 465 MobiDBLite consensus disorder prediction 132 165 - -
Gma01g00800 465 ProSitePatterns 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 73 102 IPR003016 -
Gma01g00800 465 Pfam 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 241 426 IPR001078 GO:0016746
Gma01g00800 465 Gene3D - 43 145 - -
Gma01g00800 465 MobiDBLite consensus disorder prediction 449 465 - -
Gma01g00800 465 Gene3D - 162 205 IPR036625 GO:0016746
Gma01g00800 465 Gene3D - 224 431 IPR023213 -
Gma01g00800 465 PANTHER DIHYDROLIPOAMIDE ACETYL/SUCCINYL-TRANSFERASE-RELATED 13 432 IPR045257 GO:0006086|GO:0045254
Gma01g00800 465 PANTHER DIHYDROLIPOYLLYSINE-RESIDUE ACETYLTRANSFERASE COMPONENT 4 OF PYRUVATE DEHYDROGENASE COMPLEX, CHLOROPLASTIC 13 432 - -
Gma01g00800 465 ProSiteProfiles Biotinyl/lipoyl domain profile. 48 126 IPR000089 -
Gma01g00800 465 SUPERFAMILY CoA-dependent acyltransferases 228 426 - -
Gma01g00800 465 Pfam e3 binding domain 167 201 IPR004167 GO:0016746
Gma01g00800 465 CDD lipoyl_domain 50 122 - -
Gma01g00800 465 Pfam Biotin-requiring enzyme 50 120 IPR000089 -
Gma01g00800 465 MobiDBLite consensus disorder prediction 439 465 - -
Gma01g00800 465 ProSiteProfiles Peripheral subunit-binding (PSBD) domain profile. 167 204 IPR004167 GO:0016746
Gma01g00800 465 SUPERFAMILY Single hybrid motif 48 142 IPR011053 -
Gma01g00800 465 SUPERFAMILY Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 160 203 IPR036625 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g00800 Gma-Chr1 24757463 24760709 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g00800 10 438 Acyl Lipid Metabolism Gene Families AT3G25860 68.597 0.0 555
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g00800 K00627 - gmx:100810836 718.383
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g00800 01 24757463 24760709 Gma01g00800 01 24757463 24760709 ECH