Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g00788 ATGCCTGAGTTTTGCGTGACAGGTGGTACTGGGTTCATCGCATCTTACCTGGTCAAGGCCTTACTAGAGAAGGGTCACACAGTGAGGACCACCGTGAGAAACCCAGGGGATGTGGAGAAGGTTGGTTTTCTGACTGAACTAAGTGGAGCCAAAGAGAGACTGAAGATTTTGAAAGCAGATCTATTAGTGGAAGGAAGCTTTGATGAGGCAGTGAGAGGAGTTGATGGTGTCTTTCATATGGCGTCCCCTGTGCTTATTCCTTATGATGAGAACGTTCAGCAAAATTTGATTGATCCCTGTATAAAAGGAACTTTGAATGTGCTTAACTCTTGTGTAAAAGCAACTGTGAAACATTTTGTGCTCACCTCTTCTTGCTCTTCCATAAGATACCGTGATGATGTGCAAGAAGTGTGTCCTCTTAATGAATCTCATTGGACTGATCTAGAGTATTGCAAACGCTATAAGCTGTGGTATGCATATGCAAAGACAATAGCAGAAAGAGAGGCTTGGAGGATTGCAAAAGAAAATGGCATGGATCTAGTGGTGGTTAATCCCTCTTTTGTTGTTGGTCCTCTGCTTGCACCACAACCAACTAGCACACTGCTCTTGATACTAAGCATTGTCAAAGGCATGAAGGGAGAATATCCAAATACAACAGTGGGGTTTGTACACATAAACGATGTGGTAGCTGCTCACTTGCTGGCTATGGAGGACCCCAAGGCATCTGGAAGGCTTATTTGTTCAAGCACAGTAGCTCACTGGTCGCAAATCATTGAAATGCTTCGTGCCAAATACCCTTCCTATCCGTACGAAAACGAGTGTAGCAGCCAGGAAGGAGATAATAACCCGCACAGCATGGACACTACCAAAATTACTCAGTTGGGGTTTCCTCCATTCAAAACTCTTGAACAAATGAGGGATCGTGGGAGAATAATAGAGACGAAGAACAAGTTTGGAGGAGATGAAGATCCCGAATTAGCGTCAAAGAATCAATCAGATGAAACAAAATCCAAATCATTCCAAATCAAAACTCAGAATCAATTAATCGCAACCAAACAAGAAAATCTCCAAATCAATGCTATCGCCAACTACAAGGCTTTTATTTCGCTAGATCGGCAACGACCCTTGTCCTTCTCCATCCTCTTTGTCCCCTACGATTTCGCGTGGAAGAAATCAGGCCAGCCCTCCATCGACCTCCTCCGCTTCCACCTTGCCTCGCTCCCCCTCCTACTAGTGAGCCTCTGGCACCAGGATCTTGACGATAAGAAGCCTCCATTCCCAGCAACAAAGAGCCTTGTACTTGAGAGTGTATTGGGATTGAGATTTGCCCCATCGAGAGATAAGGATAAAAATACAGAGACACGTTTAGAGAGAGTGGTGAAGTAA 1386 0.4452 MPEFCVTGGTGFIASYLVKALLEKGHTVRTTVRNPGDVEKVGFLTELSGAKERLKILKADLLVEGSFDEAVRGVDGVFHMASPVLIPYDENVQQNLIDPCIKGTLNVLNSCVKATVKHFVLTSSCSSIRYRDDVQEVCPLNESHWTDLEYCKRYKLWYAYAKTIAEREAWRIAKENGMDLVVVNPSFVVGPLLAPQPTSTLLLILSIVKGMKGEYPNTTVGFVHINDVVAAHLLAMEDPKASGRLICSSTVAHWSQIIEMLRAKYPSYPYENECSSQEGDNNPHSMDTTKITQLGFPPFKTLEQMRDRGRIIETKNKFGGDEDPELASKNQSDETKSKSFQIKTQNQLIATKQENLQINAIANYKAFISLDRQRPLSFSILFVPYDFAWKKSGQPSIDLLRFHLASLPLLLVSLWHQDLDDKKPPFPATKSLVLESVLGLRFAPSRDKDKNTETRLERVVK 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g00788 461 MobiDBLite consensus disorder prediction 314 339 - -
Gma01g00788 461 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 1 308 - -
Gma01g00788 461 MobiDBLite consensus disorder prediction 314 332 - -
Gma01g00788 461 Gene3D - 3 322 - -
Gma01g00788 461 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 5 306 IPR036291 -
Gma01g00788 461 Pfam NAD dependent epimerase/dehydratase family 5 241 IPR001509 -
Gma01g00788 461 PANTHER TETRAKETIDE ALPHA-PYRONE REDUCTASE 2 1 308 - -
Gma01g00788 461 CDD FR_SDR_e 5 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g00788 Gma-Chr1 23778858 23795222 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g00788 5 309 Miscellaneous Gene Families AT5G19440 43.082 1.49e-82 256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g00788 - - gmx:100808002 623.239
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g00788 01 23778858 23795222 Gma01g00788 01 23778858 23795222 ECH