Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g00370 ATGGGAGCCAACTTATCCAACGTGGAGAATGCTCATAAATCATCCGGCCACCTTCTCACCTTCCATTCCACCGCTAAATGGAAGACTCACTTTGATGCCTCCAAACAAACTAACAAGTTGATGGTGATCGATTTCACGGCTACATGGTGTGGACCTTGCAAATCCATGGACCCAATTATCCAAGAGTATGCTGCAAAGTACACCAACGTGGAATTCATCAAAATTGATGTGGATGAATTGATGGAGGTCTCTCAAGAATTCAAGGTGCAGGCAATGCCAACATTCATATTGATAAAGAAAGGCAAAGTTGTTGATAAGGTGAGCGTGCGTGCGTCACTGTCGAAGCTCCACCTCACACCACCGCTCTACCGTCGCGTTTGGGGTTTCGCCACCACCGCTGCAGAGGGTTGTTGCCGCCGCCGCCGCCGCCGCCGTGTGACGATGGATAATGATGACAGTCTAAAGAATTGGGTATCCGACAAATTGATGTCTCTATTAGGATATTCTCAGCCCACCCTTGTTCGGTACATGATCGGACTATCCCACCAAGCTTCTTCACCGGCTCATTTGGTTGACAAACTAGTGGAGTTTCGGATCCCATCATCAAGCGACACTCGCGCATTCGCGGAGGAAATTTTTTCTAGGGTTCCTCGTGTACCATCGAGTTTGAATCAGTATCAGAAACAAGAGAGGGAGGCTGCAATACTGGCAAGGAAGCAGAAGACTTACACAATTTTAAAGGCTGATGACAATAGTGACCATGCATATGCATATAAATCTAGAAAGCCTGATAATCGTAGCAAACGTTTCAGGAAGAAATCAGAAGTTCACGATGATGAGGGAATTGCGAGAAAGGAGAGGGGGAGACAAGTTAAGAGAAGAATTTCCCCTCATAAAGATAATCATTCAGATTCAGAAGAAGAAGAAGAAATATTGGAAGATCAAAGAGAGAAGAAGGAATTAGAGCGGCATATGAGAGAAAGAGACGAAGCAGTGACACGGAAGTTGGTGACTGAACCGAGATTAACGCGAAAGGAGAAAGAAGAGGCCATTCGAAGATCTAATGCTGCAGAGAATGATGACATTCAAACCTTGAGAAATTTTTCGAGGCAAGAATACTTGAAGAAAAGGGAGGAAAAGAAATTGCTACAACTGAGAGATGATATAGAAGATGAGCAATATCTGTTTGAAGGTGTTGAGCTTTCAGAAGCAGAATTATGCAAACTGAGGTACGATAAAGAGATGTATGAGCTTGTGAAGAAGCGGTCGAAAGAGGATGATAATGTGAATGAGTACTATAGAATGCCAGAAGCTTATGATCATGAAGGCGGTGTTAACCAGGAGAAGAGGTTTTCTGTGGCTATGCAGCGTTACAGGGATCCAAATGCTGAGGATAAGATGAATCCATTCGCCGAACAGGAGGCCTTGGAGGAACGTCAAATTCGAAAGGCAACGTTGAAGTTTGACTCAAGAAATAGAAAACAAGCCTTTGATGAGTATCAGTTTGTGTTTGATGATCAGATTGATTTTGTCAAGACATCGGTAATAGATGGAGATAAGTTTGATTATGAAGAGATGGTGGAAGATTCACATGAAAAGTCCAGAGCAAAGACAGCTAGGGAAGCACTTCAGGAAGAGAGGGAAAAGCTACCCATTTACCCTTATCGGGAGCAATTGCTCCAAGCTGTTCACGATCACCAGGTACTTATCATTGATGGTGAAACTGGTTCGGGGAAGACTACACAAATTCCTCAATACCTTCATGAAGCGGGCTACACAAAACATGGAATGGTTGCGTGTACTCAGCCGCGACGCCTTGCTGCTATAAGTGTTGCTGCTCGAGTTTCCAAAGAAATGGGTGTTAAATTAGGACATGAGGTTGGCTACTCCATCCGTTTTGAAGATTGTACAACAGATAAGACAGTGATTAAATACATGACAGATGGAATGTTGCTGAGGGAATTCCTTGGTGAACCTGATTTGGCAAGTTATAGTGTTTTGATCGTGGATGAGGCTCACGAAAGAACACTATCAACAGATATTCTGTTTGGATTAGTAAAGGATATTGCTCGTTTCAGACCTGATCTCAAGTTGCTGATATCAAGTGCTACACTTGATGCTGACAAGTTCAGCGATTACTTTGATTCTGCACCAAAATTCAAAATTCCAGGGAGACGGTATCCTTATGAAATATTTAACTTTACCGAAGCACCAAGTGACTACTTAGATGCAGCAATTGAGGCCTCACTCAAAATCCATGTCACTGAACCTCCTGGAGATATATTGGTATTCCTTACGGGTCAAGAAGAAATTGAAACAGCTGAAGAAAACTTGAAGCATCGGATCAGAGGCTTGGGGACTAAGATTGGTGAGTTAAAAATCTGCCCTATATATGCCAACCTACCAACTGAACTTCAAGCTAAAATATTTGATCCCACTCCTGAAAGGGTGCGAAAGGTTGTCCTTGCTACTAATATTGCAGAAACGTCATTGACAATTGATGGCATCAAGTATGTCATTGATCCAGGATATTGTAAGATGAAGAGTTATAATCCAAGAACCGGAATGGAGTCTTTGAAAGTAACTCCAATCTCAAAAGCTTCAGCTATGCAAAGAGCCGGTCGTTGTGGAAGAACAGGTCCTGGTAAGTGCTTCCAACTGTATACTGCATATACTTTTCACAAGGAAATGGACGATAACACTGTACCAGAAATACAGCGGACTAACCTTGCAAATGTGGTTTTAACTTTAAAATGTCTTGGTATTGACAATGTAATGCATTTTGATTTTATGGATCCTCCATCTGATGATGCCTTATTGAAAGCTCTTGAGCTTTTATATGCATTAAGTGCATTGAATAAGTTTGGTGAGTTAACTAAGGTTGGTAGACGGATGGCAGAGTTCCCTCTTGATCCTACATTGTCAAAAATGATAGTGGCCTCAGAAAAGTTCAAGTGTTCAGATGATATAATCTCTATTGCTGCTATGCTTTCTGTTGGTAAGTCAATATTCTACCGTCCAAAGGATAAACAAGTATATGCAGACAATGCAATGAGGAATTTTCACACTGGAAATGTTGGAGACCATATTGCATTACTAAGGGTCTACAATTCATGGAAGGAGACCAATTATTCAACACAATGGTGTTATGAAAATTACATACAGGTAAGGAGCATGAGACAGGCTAGGGATATCCGTGATCAACTTGCAGGTCTTTTAGAGAGGGTTGAGATCGAACTAACTTCAAATTCTAGTGATTTCGATGCCATCAAGAAATCCATTACATCTGGGTTTTTCCCACACTCTGCGAGACTGCAAAAGTATGGAATATATAAGACTGTTAAACAATCACAGAATGTTCGCATACACCCTGGTTCGGGGCTGGCGCAGGTTCTTCCTAGATGGGTTGTATACCATGAACTAGTACTCACAACCAAGGAATATATGAGGCAGGTGACAGAGATAAATCCAGGGTGGCTGGCGGAGATAGCCCCTCACTATTACCAGCTGAAGGATGTTGAAGATTCATATTCCAACTAG 3540 0.4212 MGANLSNVENAHKSSGHLLTFHSTAKWKTHFDASKQTNKLMVIDFTATWCGPCKSMDPIIQEYAAKYTNVEFIKIDVDELMEVSQEFKVQAMPTFILIKKGKVVDKVSVRASLSKLHLTPPLYRRVWGFATTAAEGCCRRRRRRRVTMDNDDSLKNWVSDKLMSLLGYSQPTLVRYMIGLSHQASSPAHLVDKLVEFRIPSSSDTRAFAEEIFSRVPRVPSSLNQYQKQEREAAILARKQKTYTILKADDNSDHAYAYKSRKPDNRSKRFRKKSEVHDDEGIARKERGRQVKRRISPHKDNHSDSEEEEEILEDQREKKELERHMRERDEAVTRKLVTEPRLTRKEKEEAIRRSNAAENDDIQTLRNFSRQEYLKKREEKKLLQLRDDIEDEQYLFEGVELSEAELCKLRYDKEMYELVKKRSKEDDNVNEYYRMPEAYDHEGGVNQEKRFSVAMQRYRDPNAEDKMNPFAEQEALEERQIRKATLKFDSRNRKQAFDEYQFVFDDQIDFVKTSVIDGDKFDYEEMVEDSHEKSRAKTAREALQEEREKLPIYPYREQLLQAVHDHQVLIIDGETGSGKTTQIPQYLHEAGYTKHGMVACTQPRRLAAISVAARVSKEMGVKLGHEVGYSIRFEDCTTDKTVIKYMTDGMLLREFLGEPDLASYSVLIVDEAHERTLSTDILFGLVKDIARFRPDLKLLISSATLDADKFSDYFDSAPKFKIPGRRYPYEIFNFTEAPSDYLDAAIEASLKIHVTEPPGDILVFLTGQEEIETAEENLKHRIRGLGTKIGELKICPIYANLPTELQAKIFDPTPERVRKVVLATNIAETSLTIDGIKYVIDPGYCKMKSYNPRTGMESLKVTPISKASAMQRAGRCGRTGPGKCFQLYTAYTFHKEMDDNTVPEIQRTNLANVVLTLKCLGIDNVMHFDFMDPPSDDALLKALELLYALSALNKFGELTKVGRRMAEFPLDPTLSKMIVASEKFKCSDDIISIAAMLSVGKSIFYRPKDKQVYADNAMRNFHTGNVGDHIALLRVYNSWKETNYSTQWCYENYIQVRSMRQARDIRDQLAGLLERVEIELTSNSSDFDAIKKSITSGFFPHSARLQKYGIYKTVKQSQNVRIHPGSGLAQVLPRWVVYHELVLTTKEYMRQVTEINPGWLAEIAPHYYQLKDVEDSYSN 1179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g00370 1179 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 560 723 IPR014001 -
Gma01g00370 1179 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 543 1074 IPR027417 -
Gma01g00370 1179 Coils Coil 375 395 - -
Gma01g00370 1179 Gene3D - 506 725 IPR027417 -
Gma01g00370 1179 Coils Coil 302 324 - -
Gma01g00370 1179 Gene3D Glutaredoxin 3 117 - -
Gma01g00370 1179 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 1090 1167 IPR011709 -
Gma01g00370 1179 Gene3D - 924 1084 - -
Gma01g00370 1179 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 745 921 IPR001650 -
Gma01g00370 1179 Coils Coil 1059 1079 - -
Gma01g00370 1179 SMART ha2_5 941 1033 IPR007502 GO:0004386
Gma01g00370 1179 CDD TRX_family 30 108 - -
Gma01g00370 1179 SUPERFAMILY Thioredoxin-like 13 107 IPR036249 -
Gma01g00370 1179 PANTHER OS05G0389800 PROTEIN 247 1175 - -
Gma01g00370 1179 Pfam Helicase conserved C-terminal domain 753 880 IPR001650 -
Gma01g00370 1179 SMART ultradead3 548 732 IPR014001 -
Gma01g00370 1179 Pfam Helicase associated domain (HA2) 942 1015 IPR007502 GO:0004386
Gma01g00370 1179 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 665 674 IPR002464 -
Gma01g00370 1179 ProSiteProfiles Thioredoxin domain profile. 1 132 IPR013766 -
Gma01g00370 1179 Pfam Thioredoxin 29 116 IPR013766 -
Gma01g00370 1179 Gene3D - 726 901 IPR027417 -
Gma01g00370 1179 Pfam DEAD/DEAH box helicase 555 708 IPR011545 GO:0003676|GO:0005524
Gma01g00370 1179 ProSitePatterns Thioredoxin family active site. 42 60 IPR017937 -
Gma01g00370 1179 PANTHER ATP-DEPENDENT RNA HELICASE 247 1175 - -
Gma01g00370 1179 SMART helicmild6 772 880 IPR001650 -
Gma01g00370 1179 CDD SF2_C_RHA 727 888 - -
Gma01g00370 1179 MobiDBLite consensus disorder prediction 256 287 - -
Gma01g00370 1179 MobiDBLite consensus disorder prediction 256 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g00370 Gma-Chr1 4469716 4475187 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g00370 K12813 - gmx:100791029 2028.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g00370 01 4469716 4475187 Gma01g00370 01 4469716 4475187 ECH