Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g00348 ATGTCTTCCCGGCGTCACTCACTAAGCGGCCCGCCACCACTCTCCGGCACCGAGTCGACTCATAACCTCCGACAGCGAGTCATCACGTGCCTTAACAAACTCTCCGACCGCGACACTCTCGCCGGCGCCGCCGCGGAACTCGAGTCCATCGCCAGAACCCTAAACCATGACTCGTTCTCCTCCTTCCTCTCTTGCATTCACAACACTGACTCCTCTTCCAAATCACCGGTTCGAAAACAATGCGTTCATCTCTTAAACGTTCTCTCGCGCTTCCACGGCGAAGCGCTTTCGCCTTTCATTTCAAAAATGCTCGCCACCGTGCTCCGGCGGCTCCGCGACACCGACTCCGCCGTGCGATCCGAGTGCGTGGACGCCGTGGCGTCGATGTCGTCGCGGATCACGCGGCCGCCGTTCTCCGCCACGTTCCTGCGGCCGCTCATGGACGCACTGGCGCAGGAGCAGGAAGCCAACGCGCAGATCGGCGCCGCGCTGTGCCTCGCGGCGGCGATCGAGGCGGCGCCGGACCCCGACGCGGAGGCCCTTCGCCGGAGCGCGCTGCCGCGACTCGGGAAGCTCGTGAAGAGCGACGCGTGCAGGGCGCGGGCGGCACTGCTGGTACTGATCGGAAGCGTGGTCGGTGCTGGCGGCGCGTCGAGCCGCGGCGCGGTGAACTGGCTCGTGCCGTGCCTCGTGGAGTTCCTCGGCAGTGAGGACTGGACGGTGAGGAAGGCCGCGGCGGAGGCGCTGGCGAAGGTGGCTTCCGTGGAGAGAGATTTGGCGTCGCAGCATAAGGCTCTGTGTTTGGATTCGTTGCAGAATCGGAGATTTGATAAGATCAAAGTGGTTCGGGAGACTATGAATCGTGCATTGGAGACGTGGAAGGAGGTAACTGAAGATGCTCCTGCTTCGCAAGTAAAGTCTGAATGTGCTTCTGTTGGCACAGATGATGGTAAAAGTCAGTGTGCCACTAAAAGTTCACCCAATGTTGGCTTTAAGTCTTCTTCTAAAACAGTCACTGCCAACAGGTCCCCTGCATCTGTGGTTTCATTCATGTCGTCCATTAAAAGAGAGAGTTCTCTAAAGACTAATGAGAGGCATTTGAGAATGGGGACAATGCATCAGCAGGGTCATGAGAAATCCTCCGATGAGAAACTTGAAACTCCATTTTTGGGTTCCTCCCACTCAAATATGTCTAGGGAAGATGATATTAAAAGGTCTAATGTTGAAGTTTCTAAGCCACCCCCATATCAAAATCAAAATGGGGTAAATTCGAGGGCAGAGATAAAGCGTGTTCTCTTTAGCAAGATGTCTGATGAAAAAATGAGGAGATTCAGTGGTTCAAAATCTCGTGTAGTTCCATGTATTGATGATGATGATCTTGATGCAGATGTTATTGTCAACAATGCAAATGAAGTTTGTGAGAGCCCACAAGATGTTGAGGAGTTTGCTTTGATCCGTGAACAACTTCTTCAAATTGAAAACCAGCAATCAAATCTATTAGACCTCCTCCAGAGATTTATTGGAAGCTCCCAAAGTGGTATGAATTCTCTGGAGTCACGTGTACATGGCCTAGAGATGGCCCTGGATGAAATATCACATGATTTGGCAGTTTCAGGTGGCAGGGTTTCCAATATTGATGCCACAGAAGACACTTGTTGCAAGCTACCTGGTACTGACTTTTTGAGTTCTAAATTCTGGAAGAAGACAGAAGGTCGTTATTCCACATCAAGGTTCTCTTTAGGAAGCATACCATCAACAGATGCTGTGCATATTGCAACCAATAAAGATGGAAAAAGAGAAATATTAACTGCAAATAACAATAGATTGCAACATGGTAAGGGTGGATATTTTGTAAACCCATTGGCAGAAGTTCAAAGCGATTTGAAAGGGCATCATACATATAAACTTTCTAAAAACTTATTCCAAGATGCTGTGAGGAGATATGATGGCATTCAACCAGCTACTGAATCACTCAGGAACCAGAATATCAGGTCATCCGTGTAG 2004 0.506 MSSRRHSLSGPPPLSGTESTHNLRQRVITCLNKLSDRDTLAGAAAELESIARTLNHDSFSSFLSCIHNTDSSSKSPVRKQCVHLLNVLSRFHGEALSPFISKMLATVLRRLRDTDSAVRSECVDAVASMSSRITRPPFSATFLRPLMDALAQEQEANAQIGAALCLAAAIEAAPDPDAEALRRSALPRLGKLVKSDACRARAALLVLIGSVVGAGGASSRGAVNWLVPCLVEFLGSEDWTVRKAAAEALAKVASVERDLASQHKALCLDSLQNRRFDKIKVVRETMNRALETWKEVTEDAPASQVKSECASVGTDDGKSQCATKSSPNVGFKSSSKTVTANRSPASVVSFMSSIKRESSLKTNERHLRMGTMHQQGHEKSSDEKLETPFLGSSHSNMSREDDIKRSNVEVSKPPPYQNQNGVNSRAEIKRVLFSKMSDEKMRRFSGSKSRVVPCIDDDDLDADVIVNNANEVCESPQDVEEFALIREQLLQIENQQSNLLDLLQRFIGSSQSGMNSLESRVHGLEMALDEISHDLAVSGGRVSNIDATEDTCCKLPGTDFLSSKFWKKTEGRYSTSRFSLGSIPSTDAVHIATNKDGKREILTANNNRLQHGKGGYFVNPLAEVQSDLKGHHTYKLSKNLFQDAVRRYDGIQPATESLRNQNIRSSV 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g00348 667 PANTHER TORTIFOLIA1-LIKE PROTEIN 4 3 651 - -
Gma01g00348 667 Pfam HEAT repeat 226 254 IPR000357 GO:0005515
Gma01g00348 667 Coils Coil 514 534 - -
Gma01g00348 667 SUPERFAMILY ARM repeat 19 295 IPR016024 -
Gma01g00348 667 MobiDBLite consensus disorder prediction 1 21 - -
Gma01g00348 667 ProSiteProfiles HEAT repeat profile. 226 264 IPR021133 -
Gma01g00348 667 PANTHER MICROTUBULE-ASSOCIATED PROTEIN TORTIFOLIA1 3 651 IPR033337 GO:0005874|GO:0008017
Gma01g00348 667 MobiDBLite consensus disorder prediction 316 343 - -
Gma01g00348 667 Coils Coil 485 505 - -
Gma01g00348 667 Gene3D - 15 371 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g00348 Gma-Chr1 4156328 4160337 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g00348 - - gmx:100781440 1221.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g00348 01 4156328 4160337 Gma01g00348 01 4156328 4160337 ECH
Gma01g00348 01 4156328 4160337 Gma02g00241 02 2418294 2423559 GST