Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g00280 ATGGGGCTGACATTCACAAAGCTTTTCAGTCGGCTTTTCGCGAAGAAGGAAATGCGAATTCTGATGGTTGGTCTTGATGCTGCTGGTAAGACCACTATCCTGTACAAGCTCAAGCTCGGAGAGATCGTTACCACAATTCCTACCATCGGGTTCAATGTTGAGACTGTGGAATACAAGAACATTAGCTTCACTGTTTGGGATGTTGGTGGCCAGGACAAGattcgtcccttgtggaggcactacttccagaacacccagggtcttatttttgttgtagacagcaatgatagggacagagttgttgaggccagagatgagttgcataggatgttgaatgagGATGAACTGAGAGATGCAGTATTGCTTGTGTTTGCCAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAGATTACCGACAAGTTGGGTCTACACTCTCTCAGACAGCGCCACTGgtacattcagagcacctgtgcaacctctggggagggcctttacgaaggtctggactggctttccaacaacattgccaataagGCTTAA 546 0.2894 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g00280 181 CDD Arf1_5_like 18 176 IPR045872 GO:0003924
Gma01g00280 181 PRINTS GTP-binding SAR1 protein signature 19 42 IPR006689 GO:0003924|GO:0005525
Gma01g00280 181 PRINTS GTP-binding SAR1 protein signature 47 71 IPR006689 GO:0003924|GO:0005525
Gma01g00280 181 PRINTS GTP-binding SAR1 protein signature 74 99 IPR006689 GO:0003924|GO:0005525
Gma01g00280 181 PRINTS GTP-binding SAR1 protein signature 119 140 IPR006689 GO:0003924|GO:0005525
Gma01g00280 181 ProSiteProfiles small GTPase Arf family profile. 11 177 - -
Gma01g00280 181 PANTHER ADP-RIBOSYLATION FACTOR A1F 1 181 - -
Gma01g00280 181 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 14 179 IPR027417 -
Gma01g00280 181 SMART sar_sub_1 1 177 IPR006689 GO:0003924|GO:0005525
Gma01g00280 181 PANTHER ADP RIBOSYLATION FACTOR-RELATED 1 181 IPR024156 GO:0005525
Gma01g00280 181 SMART arf_sub_2 1 181 - -
Gma01g00280 181 TIGRFAM small_GTP: small GTP-binding protein domain 16 157 IPR005225 GO:0005525
Gma01g00280 181 Pfam ADP-ribosylation factor family 5 177 IPR006689 GO:0003924|GO:0005525
Gma01g00280 181 SMART rab_sub_5 18 180 - -
Gma01g00280 181 Gene3D - 4 181 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g00280 Gma-Chr1 3195018 3198774 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g00280 K07937 - jre:109001166 366.696
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g00280 01 3195018 3198774 Gma01g00280 01 3195018 3198774 ECH
Gma01g00280 01 3195018 3198774 Gma02g00318 02 3311871 3314509 GST
Gma01g00280 01 3195018 3198774 Gma18g01262 18 20819902 20826570 PCT
Gma18g01262 18 20819902 20826570 Gma01g00280 01 3195018 3198774 PCT