Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g00260 ATGAAGAGGAACAGAAGTTTTTCCTTACTCTTTTTCCTGTCCTTGTTGGTGATTATCTTTGTCACCTTCTCTATAGTTTCTGTGGAAGCAAGGAAGACAAACATCAAGAAAAAACTTCACAAACGTCACAAAGGTGGTCACACTCAAGGGTCACATTCTCCATGCCCAGTGCCAACCCCTCAAGGGAGCACCTTTGACGTTTTGTCTTTTGGCGCCAAGGGAAATGGAGTTTCTGATGATTCAGAGGCATTTCTAGCTGCATGGAATGGTGCATGTAAAGTTGCTGGTGCTACAGTTAAAATTCCAGCACAACTCAAGTTCCTCATCAAACCTGCTACTTTACAAGGCCCTTGTATATCTGACCTTACTCTTCAGATAGATGGAACTCTGTTGGCACCTCCTGAAGCATCTACCTGGCCAAAATCCAGTTTGTTTCAGTGGATAAATTTCAAGTGGGTGCGGAACTTCACCATCAAAGGTTCTGGCACTGTTGATGGCCAAGGCTATAACTGGTGGAGCTCCTCAGAATTTTATGACATACAGAAGAGCTACTCCAAACATATTCCTGGCATGAAACCAACCGCTATAAGATTCTACTCCAGCAACTTTGTAACAGTTCGTGATATCAGAATCATAAACAGTCCTCTGTGCCATCTAAAATTTGACAACTCAAAGGGGATTAAAGTTAACAACATTACAATATCCTCCCCGGAGAATAGCCCCAACACTGATGGCATTCACTTACAAAACACACAGGACGTAGAAATTCAACGTTCTATCATTTCAACAGGAGATGACTGTGTATCCATCCAAACCGGTTGCTCTAATATTCATGTCCACCACATTAATTGTGGCCCTGGACATGGTATAAGTTTGGGAGGATTAGGAAAAGACAAGAGTGCGGCATGTGTGTCTGACATCACTGTTGAGGATATATCTATGAAAAACACTCTATATGGAGCAAGGATCAAAACATGGCAGGGAGGCATTGGTATGGTTAAAAATGTGACATTTTCCAGAATTCAAGTCTATGATGTTATGTACCCAATAATGATAGACCAATACTATTGTGACAAGCAAATCTGCAAGAACCATACAAGCACTGTGGTGATTTCTGGGGTTAAGTTTGATCAAATACATGGAACTTATGGTATGCAGCCTGTGCATCTAGCTTGCAGCAATTCCATACCATGCACAGATGTTGATTTAACTGATATTCAACTGAGTCCCTCCCCTAAATATAGAGGTTTGCAACAAGCTGTGTGCTGGAACTCTTATGGAAAATCACAAGGGCCCTTTCTACCTTCAAGCATTGATTATTGCTTGAGAAGTGGTGGTGGATTAATCAAGAGGATAGCAAGGTCACATGATAAAGTGTGCTACTAA 1386 0.4156 MKRNRSFSLLFFLSLLVIIFVTFSIVSVEARKTNIKKKLHKRHKGGHTQGSHSPCPVPTPQGSTFDVLSFGAKGNGVSDDSEAFLAAWNGACKVAGATVKIPAQLKFLIKPATLQGPCISDLTLQIDGTLLAPPEASTWPKSSLFQWINFKWVRNFTIKGSGTVDGQGYNWWSSSEFYDIQKSYSKHIPGMKPTAIRFYSSNFVTVRDIRIINSPLCHLKFDNSKGIKVNNITISSPENSPNTDGIHLQNTQDVEIQRSIISTGDDCVSIQTGCSNIHVHHINCGPGHGISLGGLGKDKSAACVSDITVEDISMKNTLYGARIKTWQGGIGMVKNVTFSRIQVYDVMYPIMIDQYYCDKQICKNHTSTVVISGVKFDQIHGTYGMQPVHLACSNSIPCTDVDLTDIQLSPSPKYRGLQQAVCWNSYGKSQGPFLPSSIDYCLRSGGGLIKRIARSHDKVCY 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g00260 461 PANTHER PECTIN LYASE-LIKE SUPERFAMILY PROTEIN 19 449 - -
Gma01g00260 461 PANTHER - 19 449 - -
Gma01g00260 461 SUPERFAMILY Pectin lyase-like 57 438 IPR011050 -
Gma01g00260 461 SMART pbh1 333 354 IPR006626 -
Gma01g00260 461 SMART pbh1 224 250 IPR006626 -
Gma01g00260 461 SMART pbh1 251 272 IPR006626 -
Gma01g00260 461 SMART pbh1 274 294 IPR006626 -
Gma01g00260 461 SMART pbh1 304 325 IPR006626 -
Gma01g00260 461 Pfam Glycosyl hydrolases family 28 97 415 IPR000743 GO:0004650|GO:0005975
Gma01g00260 461 Gene3D - 57 439 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g00260 Gma-Chr1 2955684 2958840 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g00260 1 460 Glycoside Hydrolase AT3G26610 61.489 0.0 601
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g00260 K01213 - gmx:100803027 908.672
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g00260 01 2955684 2958840 Gma01g00260 01 2955684 2958840 ECH