Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g00103 ATGGCTGCTCTGCAATACTTGGAATCGCTGCGCAACGCGCATCCTGAGCTCTCCGATTGGTACAATTCGCTGGCGGATCTATACCAGAACAAGCTCTGGCACCAGCTTACCCTCAAGCTTGAGCAGTTCGTGGCTCTCGCCGTCTTCCAGGCCGGTGATGCATTAATACAATTATATCACAATTTCATCACAGACTTTGAGACCAAAATCAACCTTCTCAAGCTTGCGCATTTCGCTGTTATAGTTTCTCGGCAGTATGCTGAGAAAGAAGCTGCGGTTGGTTATCTTGGAGGGGTTATTCAGAAACTTCAAGATACTAGAGAGCAGCGCATAGAAGAACCTATTCTTTACATTAAGATGCAAATAGCAATATTAAAGCTTGAGCAAGGTGATCAAAAGGAATGCAAGAAACTTCTAGAAGATGGAAAGAGTACACTAGACAGCATGACAGATATTGATCCATCTGTATATGCTAGCTATTACTGGGTATCATCTCAGTTTCATAAGACACGTCAAGAATTTGCTGAGTTCTACAAAAGTGCCCTTCTCTATTTGGCATACACATCAGTGGAATCTCTCTCTGATTCATTCAAGCTGGATCTGGCATTTGATTTGTCCCTCTCTGCCCTTCTTGGGGATAACATCTACAACTTCGGAGAGCTACTTGCCCATCCTATAATTAAGAGCCTTATGGGGACAAAGGTGGAATGGCTTTACTACATTCTGCAGGCATTCAATGCTGGTGATTTATTACAATATCAAGAATTATGTCGGGTGCATAATGCTGCTTTAAGAGCCCAACCAGCACTAGTTCAAAATGAGCAAAAGTTGTCGGAAAAGATCAACATTCTGTGTTTGATGGAGATTATATTCAGTCGGCCTTCGGAAGATCGAACTATTCCCTTGAGTGTAATTGCAGAGCGTACAAAGCTTTCTATAGAGAATGTGGAGCATCTCCTCATGAAGAGCCTATCTGTTCATCTAATTGAGGGTATAATTGATCAAGTTGAGGGCACAGTCCACGTTTCTTGGGTGCAGCCAAGAGTTCTGGGTATTCAACAGATCAAATCCTTACGGGATCGACTAGACAGTTGGACCGGAAAAGTTCACACTGCATTGTTGTCCATTGAGGCAGAAACACCTGATCTAATTGGATCGTGA 1161 0.4298 MAALQYLESLRNAHPELSDWYNSLADLYQNKLWHQLTLKLEQFVALAVFQAGDALIQLYHNFITDFETKINLLKLAHFAVIVSRQYAEKEAAVGYLGGVIQKLQDTREQRIEEPILYIKMQIAILKLEQGDQKECKKLLEDGKSTLDSMTDIDPSVYASYYWVSSQFHKTRQEFAEFYKSALLYLAYTSVESLSDSFKLDLAFDLSLSALLGDNIYNFGELLAHPIIKSLMGTKVEWLYYILQAFNAGDLLQYQELCRVHNAALRAQPALVQNEQKLSEKINILCLMEIIFSRPSEDRTIPLSVIAERTKLSIENVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIQQIKSLRDRLDSWTGKVHTALLSIEAETPDLIGS 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g00103 386 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 272 365 - -
Gma01g00103 386 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 13 HOMOLOG B-LIKE 1 384 - -
Gma01g00103 386 SUPERFAMILY "Winged helix" DNA-binding domain 277 348 IPR036390 -
Gma01g00103 386 ProSiteProfiles PCI domain profile. 174 347 IPR000717 -
Gma01g00103 386 SMART PINT_4 272 365 IPR000717 -
Gma01g00103 386 Pfam PCI domain 238 343 IPR000717 -
Gma01g00103 386 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 13 1 384 IPR035298 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g00103 Gma-Chr1 1090182 1094864 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g00103 K03039 - gmx:100793480 736.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g00103 01 1090182 1094864 Gma01g00103 01 1090182 1094864 ECH
Gma01g00103 01 1090182 1094864 Gma09g01949 09 45149494 45155055 GST