Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g00071 ATGCCTAGCAAGCGCAAGACCAGATCCTCCGCCTCTCCCGCTGCCGCGCCGCCGAGCAAGCGCGCCTCCAGATCCTCCGCCTCTCGCGTCGCCGATTCCGCACCGGTCAAATCTGAAGCCGAGGAAGTTGTGGCAGCTTCCTCTGTCGTCAAAGAAGAGGCGCAAGCAAGCTTCACGGACGTTACTGACGGCAACGTTAGCGATGGCGAGGGGACTAACGCCAGATTCGTCGGAGAGCCTGTTCCCGACGAGGAAGCCCGGCGCCGCTGGCCGAAACGGTACCAGGAAAAGGAAAAGAAGCAATCCGCTGGGCCAAAATCAAACAGAAACGATGAAGACGAGGAGATTCAACAAGCTCGACGTCACTACACTCAGGCAGAAGTAGATGGGTGCATGCTTTACAAACTTTACGATGATGCCCATGTTAAAGCAGAAGAAGGAGAAGACAATTACATTTGTAAAATTGTTGAGATATTTGAGGCCATTGATGGGGCACTGTATTTTACGGCACAATGGTATTATAGGGCTAAAGACACTGTCATTAAAAAACTTGCATATCTCATTGAACCAAAGCGAGTTTTCTTTTCTGAAGTCCAGGATGACAACCCTTTGGATTGTCTAGTTGAAAAGCTGAACATCGCCAGAATAACATTAAATGTAGATTTAGAAGCAAAGAAGGAAACCATTCCACCTTGTGATTATTACTGTGATACACAATATCTTTTGCCATACTCCACATTTGTTAACTTACCATCAGAAAATGGGGAATCTGGTAGTGAAACTTCTTCTACAATATCTTCTGAAACTAATGGAATCGGAAAATATGAGGTGAACTCTCAACCTAAGGAAGCTTTTCTTCCCGAAGAAAGTAAAGATCCGGAGATGAAGTTACTAGATTTATATTGTGGTTGTGGTGCAATGTCAACTGGTTTGTGCCTTGGTGGAAATTTATCTGGTGTGAACCTTGTTACTAGATGGGCAGTGGACTTGAATCAACATGCTTGTGAATGTCTTAAATTAAACCATCCTGAAACTGAGGTTAGAAATGAATCGGCAGAAAATTTTCTTTCATTATTGAAGGAGTGGCAGGAATTATGTAGTTACTTCTCTCTAGTTGAAAAAAAGGTGTCACATGAGAAATATGTGAATCTTTTTAGTGAAGATGACGATGACACTAGCAGTAATGAAGAGGTTAATAGTGAAGATGACAATGAACTGAATGAAGATGATGAAATATTTGAAGTTTCTGAAATCCTTGCTGTCTGCTACGGTGACCCAAATAAGAAAAAAGAACAAGGGTTATACTTCAAGGTTCATTGGAAGGGTTATGAATCTGCCCTGGATTCTTGGGAACCAATTGAAGGTCTAAGTAATTGCAAGGAAAAGATTAAAGAATTTGTCAGTCGAGGCTTCAAGTCACAGATATTGCCTTTGCCTGGAGATGTTGATGTAATTTGTGGTGGACCTCCTTGCCAAGGTATTAGTGGTTTCAACCGGTTTCGGAACAAAGAGAGTCCTTTGGATGATGAGAAGAACAAACAACTAGTTGTTTTTATGGATATTGTTCAATACCTTAAGCCCAAATTTACATTGATGGAAAATGTGGTTGATCTTGTAAAATTTGCGGAAGGCTTTCTTGGGAGATATGCCTTGGGTCGCCTTCTTCAAATGAATTATCAAGCGCGTTTAGGAATTATGGCTGCAGGTGCTTATGGGCTTCCTCAGTTTCGTTTGCGCGTCTTTTTATGGGGGGCTGCACCTTCTCAGAAGTTGCCACAATTTCCGCTTCCAACTCATGATGTTATTGTAAGGGGTGTTATTCCCTTGGAGTTTGAGATAAACACTGTAGCATACAATGAAGGACAAAAGGTTCAACTGCAGAAGAAGCTTTTATTGGAGGATGCTATTTCTGACCTTCCTCGGGTTCAGAACAATGAGCGTCGTGATGAGATAAAATATGACAAAGCTGCTCAAACGGAGTTCCAACGATTCATTAGATTAAGCAAACATGAAATGTTGGAGCTTCAATCTAGAACAAAATCGTCGAAGTCTTTGCTATATGATCATCGTCCACTAGAATTGAATGCGGATGATTACCAACGTGTGTGTCGGATCCCTAAAAAGAAGGGTGGATGCTTCAGAGATTTACCAGGTGTTCGTGTGGGAGCTGATAACAAGGTTGAATGGGATCCTGATGTCGAACGTGTATATTTGGATTCAGGAAAACCATTGGTTCCAGATTATGCCATGACTTTTGTGAATGGAACTTCATCAAAACCTTTTGCTCGGTTATGGTGGGATGAAACTGTTCCAACTGTTGTGACAAGAGCAGAACCTCACAACCAGGCAATTTTACACCCTGAACAAGACAGAGTGTTGACGATTCGTGAAAATGCAAGACTCCAAGGTTTTCCAGATTTCTACAAGTTGTGTGGGCCGGTCAAAGAAAGGTACATTCAAGTTGGGAATGCAGTGGCAGTTCCAGTAGCTAGAGCTTTAGGATACACACTAGGCCTTGCATTTGAAGGGTCTACTTCTACAAGTGATGATCCATTGTATAAATTACCTGATAAATTTCCCATGATTAGGGATCGGGTTTCTTCTGTATCTTCCGAAGATGATGTGTAA 2628 0.4231 MPSKRKTRSSASPAAAPPSKRASRSSASRVADSAPVKSEAEEVVAASSVVKEEAQASFTDVTDGNVSDGEGTNARFVGEPVPDEEARRRWPKRYQEKEKKQSAGPKSNRNDEDEEIQQARRHYTQAEVDGCMLYKLYDDAHVKAEEGEDNYICKIVEIFEAIDGALYFTAQWYYRAKDTVIKKLAYLIEPKRVFFSEVQDDNPLDCLVEKLNIARITLNVDLEAKKETIPPCDYYCDTQYLLPYSTFVNLPSENGESGSETSSTISSETNGIGKYEVNSQPKEAFLPEESKDPEMKLLDLYCGCGAMSTGLCLGGNLSGVNLVTRWAVDLNQHACECLKLNHPETEVRNESAENFLSLLKEWQELCSYFSLVEKKVSHEKYVNLFSEDDDDTSSNEEVNSEDDNELNEDDEIFEVSEILAVCYGDPNKKKEQGLYFKVHWKGYESALDSWEPIEGLSNCKEKIKEFVSRGFKSQILPLPGDVDVICGGPPCQGISGFNRFRNKESPLDDEKNKQLVVFMDIVQYLKPKFTLMENVVDLVKFAEGFLGRYALGRLLQMNYQARLGIMAAGAYGLPQFRLRVFLWGAAPSQKLPQFPLPTHDVIVRGVIPLEFEINTVAYNEGQKVQLQKKLLLEDAISDLPRVQNNERRDEIKYDKAAQTEFQRFIRLSKHEMLELQSRTKSSKSLLYDHRPLELNADDYQRVCRIPKKKGGCFRDLPGVRVGADNKVEWDPDVERVYLDSGKPLVPDYAMTFVNGTSSKPFARLWWDETVPTVVTRAEPHNQAILHPEQDRVLTIRENARLQGFPDFYKLCGPVKERYIQVGNAVAVPVARALGYTLGLAFEGSTSTSDDPLYKLPDKFPMIRDRVSSVSSEDDV 875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g00071 875 SMART BAH_4 132 251 IPR001025 GO:0003682
Gma01g00071 875 Gene3D DNA Methylase, subunit A, domain 2 631 803 - -
Gma01g00071 875 SMART chromo_7 412 471 IPR000953 -
Gma01g00071 875 CDD BAH_plantDCM_I 133 252 - -
Gma01g00071 875 Gene3D Vaccinia Virus protein VP39 276 384 IPR029063 -
Gma01g00071 875 MobiDBLite consensus disorder prediction 1 120 - -
Gma01g00071 875 ProSiteProfiles BAH domain profile. 132 251 IPR001025 GO:0003682
Gma01g00071 875 SUPERFAMILY Chromo domain-like 399 474 IPR016197 -
Gma01g00071 875 MobiDBLite consensus disorder prediction 1 32 - -
Gma01g00071 875 Pfam C-5 cytosine-specific DNA methylase 477 836 IPR001525 GO:0008168
Gma01g00071 875 Gene3D Vaccinia Virus protein VP39 411 856 IPR029063 -
Gma01g00071 875 MobiDBLite consensus disorder prediction 253 272 - -
Gma01g00071 875 ProSiteProfiles Chromo and chromo shadow domain profile. 413 469 IPR000953 -
Gma01g00071 875 CDD CD_CMT3_like 412 467 - -
Gma01g00071 875 ProSitePatterns C-5 cytosine-specific DNA methylases active site. 483 495 IPR018117 -
Gma01g00071 875 ProSiteProfiles C-5 cytosine-specific DNA methylase (Dnmt) domain profile. 295 844 IPR001525 GO:0008168
Gma01g00071 875 MobiDBLite consensus disorder prediction 387 406 - -
Gma01g00071 875 PANTHER CYTOSINE-SPECIFIC METHYLTRANSFERASE 19 874 - -
Gma01g00071 875 TIGRFAM dcm: DNA (cytosine-5-)-methyltransferase 481 834 IPR001525 GO:0008168
Gma01g00071 875 Pfam Chromo (CHRromatin Organisation MOdifier) domain 413 469 IPR023780 -
Gma01g00071 875 Gene3D - 69 236 IPR043151 -
Gma01g00071 875 MobiDBLite consensus disorder prediction 52 69 - -
Gma01g00071 875 MobiDBLite consensus disorder prediction 80 120 - -
Gma01g00071 875 PRINTS Cytosine-specific DNA methyltransferase signature 296 312 IPR001525 GO:0008168
Gma01g00071 875 PRINTS Cytosine-specific DNA methyltransferase signature 526 540 IPR001525 GO:0008168
Gma01g00071 875 PRINTS Cytosine-specific DNA methyltransferase signature 572 585 IPR001525 GO:0008168
Gma01g00071 875 PANTHER DNA (CYTOSINE-5)-METHYLTRANSFERASE CMT3 19 874 - -
Gma01g00071 875 Coils Coil 109 129 - -
Gma01g00071 875 MobiDBLite consensus disorder prediction 389 406 - -
Gma01g00071 875 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 294 837 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g00071 Gma-Chr1 787338 795783 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g00071 K00558 - gmx:100799480 1618.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g00071 01 787338 795783 Gma01g00071 01 787338 795783 ECH