Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g1219 ATGGCGACTCGGAACATCGAGAAGATGGCTTCAATTGATGCTCAGTTGAGATTACTGGCACCCGCAAAGGTGTCTGATGATGATAAGTTAGTCGAATACGATGCTTTGTTGCTCGATCGCTTCCTTGACATTCTTCAGGATTTACATGGGGAAGACATCAGAGAAACGGTTCAAGAGTGTTATGAGCGGTCAGCTGAGTATGAAGGGAAGCATAAACCTCAGAAGTTGGAGGAACTTGGGAATATGCTTACTGGTCTTGATGCTGGGGATTCTATTGTTGTGGCCAAATCATTTTCTCACATGCTTAATTTGGCCAACTTGGCGGAGGAAGTTCAGATTGCCTATCGAAGAAGGATCAAGTTATTGAAGAAGGGTGATTTTGCTGATGAGAACTCCGCCATCACTGAATCTGACATTGAAGAGACCTTCAAGAGGCTTGTTAATCAACTAAAGAAGACCCCAGAGGAAGTCTTTGACGCTTTGAAGAATCAGACTGTAGATTTGGTCTTCACTGCTCACCCTACTCAGTCTGTTCGTAGATCTTTGCTGCAAAAGCATGGAAGGATAAGGAATTGCTTGACTCAGTTATATGCTAAAGACATAACACCCGATGATAAGCAGGAACTTGATGAGGCATTACAAAGAGAGATTCAAGCTGCATTTCGTACAGATGAAATTCGAAGGACTCCTCCTACCCCTCAAGATGAGATGAGGGCAGGAATGAGCTACTTTCATGAGACAATCTGGAAAGGGGTCCCAAAGTTTTTGCGCCGGGTTGACACAGCTCTGAAGAACATTGGAATAAACGAACGTGTCCCATATAATGCTCCTGTTATTCAATTTTCTTCTTGGATGGGAGGGGATCGTGATGGTAACCCCCGGGTAACCCCTGAGGTTACAAGGGACGTGTGCTTACTGGCTCGAATGATGGCTGCTAATTTGTACTTCTCTCAGATTGAGGATCTCATGTTTGAGTTGTCTATGTGGCGCTGCAATGATGAGCTTCGTGTTCGTGCTGAAGAACTCCACGGGTCGTCAAGGAGAGATGCAAAACATTACATTGAATTTTGGAAACAGATTCCTCCAAATGAGCCATATCGTGTTATTCTGGGTGAGGTGAGGGACAAACTATATAATACACGTGAACGTGCACGCCAATTATTAGCCAATGGAAGCTCTGACATCCCTGAAGAGACAACCTTCACAAATGTTGAGCAGTTCCTGGAGCCTCTTGAACTCTGTTATAGGTCACTCTGTGCGTGTGGTGACCGTGCAATAGCTGATGGAAGCCTCCTTGATTTCTTGCGACAAGTTTCTACATTTGGACTCTCACTCGTGAGACTTGACATCCGCCAAGAATCAGACAGGCACACCGATGTTATGAATGCAATTACACAACACTTGGAGATTGGATCTTATCGAGAATGGTCCGAGGAACGCAGGCAGGAATGGCTTTTGTCTGAGCTAAGTGGCAAGCGCCCTCTTTTTGGCCCTGATATGCCTAAAACTGAAGAAATTGCCGATGTATTGGAAACCTTCCATGTCATTTCAGAGCTTCCCTCAGACAGCTTTGGTGCTTACATAATCTCAATGGCCACATCCTCATCTGATGTTCTTGCTGTAGAGCTTTTACAACGTGAATGTCATGTGAAGGAGCCATTAAGGGTTGTCCCATTGTTTGAAAAGCTCGCCGATCTTGAAGGTGCCCCTGCCGCAGTAGCCCGCTTATTCTCCATCGATTGGTACAGAAATCGCATCAATGGAAAACAAGAAGTTATGATTGGATACTCAGATTCAGGGAAAGATGCAGGAAGGCTTTCTGCCGCTTGGGCGCTGTACAAGGCTCAAGAAGAGCTTATAAAGGTTGCTAAGGAGTTTGGTGTGAAGCTTACGATGTTCCATGGGAGAGGAGGGACTGTGGGAAGAGGAGGAGGTCCTACTCATCTTGCTATATTATCTCAGCCACCAGACACCATTCATGGGTCTCTTCGTGTGACAGTGCAAGGTGAAGTTATTGAGCAGTCATTTGGGGAGGAGCACTTGTGCTTCAGAACACTTCAGCGCTTCGCCGCTGCTACACTTGAGCATGGAATGCATCCCCCTGTGTCACCAAAACCAGAATGGCGCGCTCTCATGGATGAGATGGCAGTCATCGCCACTAAGGAGTATCGTTCCATTGTTTTCCAGGAACCTCGTTTTGTTGAATACTTCCGATGCGCTACACCCGAGTTGGAGTATGGACGAATGAATATTGGGAGTCGTCCATCAAAACGAAAGCCAAGTGGAGGAATTGAATCACTTCGTGCTATCCCTTGGATTTTTGCTTGGACTCAGACAAGGTTTCATTTACCAGTATGGCTGGGCTTTGGTGCAGCATTTAAGCATGCAATTGAGAAGGATCCCAGGAATCTCCAAATGCTGCAAGATATGTATAACCAATGGCCATTCTTCAGGGTCACCCTTGACTTGGTTGAGATGGTGTTCGCCAAGGGAGACCCAGGGATTGCCGCCCTATACGACAAACTTCTGGTGTCAGAAGAGCTATCGTCATTTGGACAGCGTCTAAGGTCTAAATTTGAAGAAACCAAGAGTTTCCTCCTTCAGATTGCTGGGCATAAAGATGTTCTCGAAGGAGACCCATACTTGAAGCAAAGACTTCGTCTTCGTGATTCATACATCACAACCCTGAACGTTTTGCAGGCATACACATTGAAGAGAATACGTGATCCAGATTACCATGTGAAGTTGAGGCCACATTTGTCAAAGGAGTATATGGAATCAAGCAAGCCAGCCGCAGAACTTGTTAAGCTTAACCCAAAGAGCGAGTATGCTCCGGGTCTCGAGGACACCCTTATTTTGACCATGAAGGGCATTGCTGCCGGCATGCAGAACACTGGTTAA 2901 0.4595 MATRNIEKMASIDAQLRLLAPAKVSDDDKLVEYDALLLDRFLDILQDLHGEDIRETVQECYERSAEYEGKHKPQKLEELGNMLTGLDAGDSIVVAKSFSHMLNLANLAEEVQIAYRRRIKLLKKGDFADENSAITESDIEETFKRLVNQLKKTPEEVFDALKNQTVDLVFTAHPTQSVRRSLLQKHGRIRNCLTQLYAKDITPDDKQELDEALQREIQAAFRTDEIRRTPPTPQDEMRAGMSYFHETIWKGVPKFLRRVDTALKNIGINERVPYNAPVIQFSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANLYFSQIEDLMFELSMWRCNDELRVRAEELHGSSRRDAKHYIEFWKQIPPNEPYRVILGEVRDKLYNTRERARQLLANGSSDIPEETTFTNVEQFLEPLELCYRSLCACGDRAIADGSLLDFLRQVSTFGLSLVRLDIRQESDRHTDVMNAITQHLEIGSYREWSEERRQEWLLSELSGKRPLFGPDMPKTEEIADVLETFHVISELPSDSFGAYIISMATSSSDVLAVELLQRECHVKEPLRVVPLFEKLADLEGAPAAVARLFSIDWYRNRINGKQEVMIGYSDSGKDAGRLSAAWALYKAQEELIKVAKEFGVKLTMFHGRGGTVGRGGGPTHLAILSQPPDTIHGSLRVTVQGEVIEQSFGEEHLCFRTLQRFAAATLEHGMHPPVSPKPEWRALMDEMAVIATKEYRSIVFQEPRFVEYFRCATPELEYGRMNIGSRPSKRKPSGGIESLRAIPWIFAWTQTRFHLPVWLGFGAAFKHAIEKDPRNLQMLQDMYNQWPFFRVTLDLVEMVFAKGDPGIAALYDKLLVSEELSSFGQRLRSKFEETKSFLLQIAGHKDVLEGDPYLKQRLRLRDSYITTLNVLQAYTLKRIRDPDYHVKLRPHLSKEYMESSKPAAELVKLNPKSEYAPGLEDTLILTMKGIAAGMQNTG 966
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g1219 966 PRINTS Phosphoenolpyruvate carboxylase signature 168 181 IPR021135 GO:0006099|GO:0008964|GO:0015977
Glsi14g1219 966 PRINTS Phosphoenolpyruvate carboxylase signature 281 296 IPR021135 GO:0006099|GO:0008964|GO:0015977
Glsi14g1219 966 PRINTS Phosphoenolpyruvate carboxylase signature 221 237 IPR021135 GO:0006099|GO:0008964|GO:0015977
Glsi14g1219 966 PRINTS Phosphoenolpyruvate carboxylase signature 441 461 IPR021135 GO:0006099|GO:0008964|GO:0015977
Glsi14g1219 966 PRINTS Phosphoenolpyruvate carboxylase signature 590 610 IPR021135 GO:0006099|GO:0008964|GO:0015977
Glsi14g1219 966 PRINTS Phosphoenolpyruvate carboxylase signature 764 790 IPR021135 GO:0006099|GO:0008964|GO:0015977
Glsi14g1219 966 PRINTS Phosphoenolpyruvate carboxylase signature 632 661 IPR021135 GO:0006099|GO:0008964|GO:0015977
Glsi14g1219 966 Pfam Phosphoenolpyruvate carboxylase 36 966 IPR021135 GO:0006099|GO:0008964|GO:0015977
Glsi14g1219 966 ProSitePatterns Phosphoenolpyruvate carboxylase active site 2. 592 604 IPR033129 -
Glsi14g1219 966 ProSitePatterns Phosphoenolpyruvate carboxylase active site 1. 169 180 IPR018129 -
Glsi14g1219 966 Gene3D Phosphoenolpyruvate/pyruvate domain 309 444 - -
Glsi14g1219 966 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 33 966 IPR015813 GO:0003824
Glsi14g1219 966 FunFam Phosphoenolpyruvate carboxylase 1 309 444 - -
Glsi14g1219 966 Hamap Phosphoenolpyruvate carboxylase [ppc]. 23 966 IPR022805 GO:0006099|GO:0008964|GO:0015977
Glsi14g1219 966 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE 5 966 IPR021135 GO:0006099|GO:0008964|GO:0015977
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g1219 Glsi-ChrGlsi14 13269993 13274780 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi14g1219 14 13269993 13274780 Glsi04g0886 04 6474010 6480353 CCT
Glsi04g1257 04 12931197 12938690 Glsi14g1219 14 13269993 13274780 CCT
Glsi14g1219 14 13269993 13274780 Glsi14g1219 14 13269993 13274780 ECH