Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g1182 ATGCGCGCCTCCAAAGCTAAAAGCCTTGGCACTGTGAGCATCCTTTTACGTTCAGCCGGCAAAACCAGTACTTCTGAGTTCAGATATCATTATTCAAGTTCATCCTTTTCGGAAGACAACAATTCTAGACTCGACAGTGACCGCACGCTCTCAAGCCTCAAGCTTCAGCGAGCCTCTGACTCAGAGGATCCGCCTAGTCTGGTGTATAAGGGAATCCATTCAATATTGCACACTTGTCAGTTGGTCAAGGGACCTGATCGCCAGGATATTGACGATGCAAAAGATTCGGAAAAAATACCAGATATATCATGGTTATCTAACATATCTCATAGTAATATATCTCTGAAACGGAAAGAGTTATCTCGTGAAAGGAAACGAACATGCATGTTTGAATTCATGCAGGTAAACCGTTTTGGCAAGTTAGTCACAAAATGTGCAGAGAAACTGGGAACAGAGGCTACTATTAAGTTGTTCAGTAAATTGGGAAGAAAACCAGGTGTAAAAGATTACAATGCACTGATAGGAATATGCATAGATAAGGCTAGGGAAACTGATGACAAAGAAGTTGCAATAGAAGAAATGGCCAAGGTTTTTCAACTCTTTAAATCAATGAGCGAACAAGGTTATCAGCTAGAAGAGCAAACGTATCGCCCACTTCTTTTGCATATAATTGACATGGGTATGGTGGAAGAATTTCAATTTTTCAATGATTTTATTAAAGACAATAATCCCAGCTCAGTTGCAAGATTGGGTTACTACGAAATGATGCTCTGGTTAAGAGTTAGTAATGAAGAAAAGATCCAAGATCTTTGTAACTATGTTGCAAACAATAACAGTGAAGACACTTCAAATTTACGAGAATGTTATTTATTGGCTCTTTGTGAAAGTGATCGGAAGAAGGAGATTTTGCAGGTGTTGGAAATTATAGACATAAAAAAGCTTTTATCTGCAGAATCTGTAGCAAAGGTATTTCAATCATTAGGAAGGCTACTATTGGAATCTGTTGCGGAGAAATTCCTTTTGGATTTCAAAATATGTGATCATGGAGCAGATAATATCACAAACTTCATTGCTAGTTATGCTGTTAGCATACCAAATTTAGCGGTTGAGGATGCCATCTCAAAATTCAAGGAATTACACCAAATACTGAAAGTTTCTCCTTCATCCGCCTCATATGAGAAGCTCATTTTGCATAGCTGTGACTCGCACAAGGTGCCCGTAGCTCTTGATATTGTTGATGAGATGTGTGAACGAGGCTTTACCTTATCAATTGAGGTGTTACACTCCATATTACGGATTTGTGAGAAAACATGTGAATATAATTTGGTCCATCGGATCTACTCTACCATATGTCGCTACAATTTGAAGTCAAATGGTGAAACATTCAGGCATATAATAGTCTTGTTCATGAAGATAAAAGATTTTAAAAGTGCGTATAAGATGCTTGATGATTTGGAGGAAATGAATTTGAAGCCAAGTGTGGGCATGTACAATGCTATAATGGCAGAACATTTTCGAGAGAAAAATATTCGTGAGGGGCTGAGGGTCCTTGAGCACATGCGACGTGCCAATGTAAAACCTGATTCACAGACTTTGAGCTATCTGATTAGCAACTCTGAAACTGGAGAGGATATAGACAAGGAAAGCTAG 1650 0.3867 MRASKAKSLGTVSILLRSAGKTSTSEFRYHYSSSSFSEDNNSRLDSDRTLSSLKLQRASDSEDPPSLVYKGIHSILHTCQLVKGPDRQDIDDAKDSEKIPDISWLSNISHSNISLKRKELSRERKRTCMFEFMQVNRFGKLVTKCAEKLGTEATIKLFSKLGRKPGVKDYNALIGICIDKARETDDKEVAIEEMAKVFQLFKSMSEQGYQLEEQTYRPLLLHIIDMGMVEEFQFFNDFIKDNNPSSVARLGYYEMMLWLRVSNEEKIQDLCNYVANNNSEDTSNLRECYLLALCESDRKKEILQVLEIIDIKKLLSAESVAKVFQSLGRLLLESVAEKFLLDFKICDHGADNITNFIASYAVSIPNLAVEDAISKFKELHQILKVSPSSASYEKLILHSCDSHKVPVALDIVDEMCERGFTLSIEVLHSILRICEKTCEYNLVHRIYSTICRYNLKSNGETFRHIIVLFMKIKDFKSAYKMLDDLEEMNLKPSVGMYNAIMAEHFREKNIREGLRVLEHMRRANVKPDSQTLSYLISNSETGEDIDKES 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g1182 549 Gene3D Tetratricopeptide repeat domain 368 547 IPR011990 GO:0005515
Glsi14g1182 549 NCBIfam pentatricopeptide repeat 496 529 IPR002885 -
Glsi14g1182 549 Gene3D Tetratricopeptide repeat domain 136 329 IPR011990 GO:0005515
Glsi14g1182 549 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 493 527 IPR002885 -
Glsi14g1182 549 PANTHER OS02G0132600 PROTEIN 10 547 - -
Glsi14g1182 549 Pfam Pentacotripeptide-repeat region of PRORP 397 539 IPR033443 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g1182 Glsi-ChrGlsi14 12962234 12969720 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g1182 385 547 Miscellaneous Gene Families AT4G11690 20.245 7.82e-07 50.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi14g1182 14 12962234 12969720 Glsi14g1182 14 12962234 12969720 ECH