Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Glsi14g1076 | ATGGGAGATCGTTTGAGGCCCGTTTCCATTGAGGAATTGCCATCACATTTGGTTTTAGAAATTTTAAGCTCCGGCAGGCTCAGTGCAGTGGACCTTGTTCGTTTAGAGTTGACTTCAAAAACTTTTGGTGGGAGTCATGGTTTGTCCTACCCTTTCAAGTTTCGGTCATTAGTGGACTTTGCAGCATTTCTGCTCTGCACATCCCATCTTATCTATTCTAGGATGGGTTTGAATTCTCAGAGGGAGTTATATGATAGATGTGGCGGAAATTGGAAGCGGGTTTTGCGGTTCTTGCAGTCTCTGGAACAATCATCTGAGACGGTCGAGACATCATCAGGCAATATGCAAATTACAACTGGAAAATATCACACCTTTTTGATCAGCAATTCATCTGTCTACTCTTGTGGTTCTGGATTGTGTGGTGTACTTGGTCATGGACCTGAAACAACACAATGTGTAGCATTTACCCAGATTGATTTCCCAACTTTAGCACGCGTGGTTCATGTTTCAGCCTCCTATAATCATGCAGCTTTCGTCACGCAATCCGGAGAGGTATTCACATGTGGTGATAATTCATCATCTTGTTGCGGGCATAGAGATACAAGCCGACCTGTTTTTAGGCCACGACTTGTTGAAGCCCTGAAGGGGGTTTACTGCAAGCAGGTTTCCGCAGGGCTTAACTTTACAGTCTTCCTCACAAGACATGGTCGAGTTTATACATGTGGTGCTAACACACATGGTCAACTTGGTCATGGTGACACTCAGGACAGACCAACTCCTAAAATTGTTGAAATGCTTGACAGTGTTGGCGCTGTTGTTCAGATTGCTGCTGGACCAAGTTATGCCTTAGCTGTCATGGAAAATGGAGCAGTGTACTCCTTTGGATTGGGTGCTAATTTCTGTCTCGGCCATGGTGAGCAACAAGATGAGTTTCAGCCACGTGCTATACAGATATTTAGAAGAAAAGGAATTCATGTGGTCCGTGTTTCTGCTGGCGATGAGCATGCAGTGGCACTTGATTCAAATGGATTTGTTTATACCTGGGGCAAGGGCTATTGTGGTGCTTTAGGTCATGGAGATGAGATTGACAAGACAACTCCAGAGATCTTGACTAGTCTCAAGAGTCACTTGGCTGTTCAGGTGTGTGCAAGAAAGAGGAAAACTTTCGTTCTGGTTGATTCTGGTTCAGTATATGGATTTGGGTCGATGGGATTTGGTAGCCTTGGATTTCTGGACAGAAGGGTATCTGATAAAGTCTTGAGGCCTCGAATCCTTGATACCTTAAGAACTCACCATGTTTCTCAGGTTAGCACTGGGCTGTACCACACTGTTGTAATCACTAACAGAGGACAGATATTTGGTTTTGGAGACAATGAAAGAGCGCAACTTGGGTGTGATACATTAAGAGGATGTCTTGAGCCAACTGAAATTTTCATAAAAGATGCAGCTGATGATGATGCTGTTCCCATTTTAGAAAGCTTCTGA | 1485 | 0.4404 | MGDRLRPVSIEELPSHLVLEILSSGRLSAVDLVRLELTSKTFGGSHGLSYPFKFRSLVDFAAFLLCTSHLIYSRMGLNSQRELYDRCGGNWKRVLRFLQSLEQSSETVETSSGNMQITTGKYHTFLISNSSVYSCGSGLCGVLGHGPETTQCVAFTQIDFPTLARVVHVSASYNHAAFVTQSGEVFTCGDNSSSCCGHRDTSRPVFRPRLVEALKGVYCKQVSAGLNFTVFLTRHGRVYTCGANTHGQLGHGDTQDRPTPKIVEMLDSVGAVVQIAAGPSYALAVMENGAVYSFGLGANFCLGHGEQQDEFQPRAIQIFRRKGIHVVRVSAGDEHAVALDSNGFVYTWGKGYCGALGHGDEIDKTTPEILTSLKSHLAVQVCARKRKTFVLVDSGSVYGFGSMGFGSLGFLDRRVSDKVLRPRILDTLRTHHVSQVSTGLYHTVVITNRGQIFGFGDNERAQLGCDTLRGCLEPTEIFIKDAADDDAVPILESF | 494 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Glsi14g1076 | 494 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 342 | 383 | IPR000408 | - | |
| Glsi14g1076 | 494 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 236 | 285 | IPR000408 | - | |
| Glsi14g1076 | 494 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 288 | 339 | IPR000408 | - | |
| Glsi14g1076 | 494 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 182 | 232 | IPR000408 | - | |
| Glsi14g1076 | 494 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 130 | 182 | IPR000408 | - | |
| Glsi14g1076 | 494 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 395 | 449 | IPR000408 | - | |
| Glsi14g1076 | 494 | SUPERFAMILY | RCC1/BLIP-II | 108 | 412 | IPR009091 | - | |
| Glsi14g1076 | 494 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 329 | 339 | IPR000408 | - | |
| Glsi14g1076 | 494 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 289 | 342 | IPR000408 | - | |
| Glsi14g1076 | 494 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 436 | 446 | IPR000408 | - | |
| Glsi14g1076 | 494 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 183 | 235 | IPR000408 | - | |
| Glsi14g1076 | 494 | Gene3D | - | 272 | 488 | IPR009091 | - | |
| Glsi14g1076 | 494 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 343 | 394 | IPR000408 | - | |
| Glsi14g1076 | 494 | PRINTS | Chromosome condensation regulator RCC1 signature | 131 | 147 | IPR000408 | - | |
| Glsi14g1076 | 494 | PRINTS | Chromosome condensation regulator RCC1 signature | 275 | 291 | IPR000408 | - | |
| Glsi14g1076 | 494 | PRINTS | Chromosome condensation regulator RCC1 signature | 185 | 201 | IPR000408 | - | |
| Glsi14g1076 | 494 | PRINTS | Chromosome condensation regulator RCC1 signature | 291 | 305 | IPR000408 | - | |
| Glsi14g1076 | 494 | PRINTS | Chromosome condensation regulator RCC1 signature | 445 | 466 | IPR000408 | - | |
| Glsi14g1076 | 494 | PRINTS | Chromosome condensation regulator RCC1 signature | 384 | 402 | IPR000408 | - | |
| Glsi14g1076 | 494 | SUPERFAMILY | RCC1/BLIP-II | 379 | 478 | IPR009091 | - | |
| Glsi14g1076 | 494 | Gene3D | - | 87 | 271 | IPR009091 | - | |
| Glsi14g1076 | 494 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 433 | 461 | - | - | |
| Glsi14g1076 | 494 | CDD | F-box_SF | 11 | 42 | - | - | |
| Glsi14g1076 | 494 | PANTHER | REGULATOR OF CHROMOSOME CONDENSATION | 220 | 467 | - | - | |
| Glsi14g1076 | 494 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 236 | 288 | IPR000408 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Glsi14g1076 | Glsi-ChrGlsi14 | 11813444 | 11818297 | Dispersed/Wgd |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Glsi14g1076 | 14 | 11813444 | 11818297 | Glsi14g1076 | 14 | 11813444 | 11818297 | ECH |