LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi14g0993	ATGATAAGCATTTCAAAAACCGCATGTTTCACTTCTATAATTTTTGCAGCGGTACTACTTGAGGTTGAAGGCCGCAATCTGCAAAACAAAGCTTCTGCAGCATCAATTTCAGATGGATTTGCTGATGGTGTTCAACCCAGAACTTCTCACTTGCTTCTCAAAGGGATTGAATCTTCTCAAGAGGAGTGTAAGCAAATGTATGGCTTCTTGCCTTGTTCTACTAGCATCTTTGGCCATCTCTTTCTGATTTTGGTTTATGAGTTCTTGTTGTTCCATGGAGAATCATACTTGGCTGCTGGAGGTGAGCAGATCTTCAAGATTCTTGGTCCAGGAATTTTTGGTGCAAGTGCCTTTGATATTCTTGGTGCCCTTCCGGAGTCTTTGATTCTTTTAGTCACTGGACTTTCCAGCAATAAGGAGAGTGCACAAGAGTATGCTTCAACTGGAGTTGGGTTATTGGCGGGATCATCCATCATGCTTCTCACAGTGGTTTGGGGAACCTGTGTTATCACTGGCAGTCAAAAATTGATAAATGACTCAAAGCATAGACACTCTCCTCATTCATATTCATCAACTGCAACACTCAAAGAATTATTGACTGGTTTTGGCATTACTATGGATAAAGAGACAAGGGACATGGCAAGAATCATGGTTCTCTCAGTTATACCACTCATAATAATGCAGATTCCCAATTTGTTCCAATTCTCTTCTGTGCTACGAGCTGTGACTTTGATGATTGCTCTCAGCATCACTGTCTTATGGTTCTTCTTGTACTTCATTTACCAGATCTTTAAACCTCAGATAGAGAAAACAAGGCTAGAATACATAAAGCACCATGATTTAATATTGAGAATTTTCCAGCATGTTGAAAAGCAAACCCTGCAAAGGATCCTTACTGAGGATGGGACTCCCAATGTAGCAGCCATAAATGGGCTTTATAACGAAATTAGTCAACGTGGGGACAGAGATTTATTAGCTTCTGAAGTAAAAGAGCTGCTGCTCAAGAACAAATTAACTGAAACAAACGTCACAGAGGAACAAGTAGAAGACATGGTAAGAGTGTTTGATCGAAATGGTGACCAAATTATAACCAAGGAAGAGTTTGTCACTGGCTTAACACAATGGATTGAGGAAACACGGCATGCTTTGGATAAACAGTATATACCCAGAAAATCCCTCAAGAACATATACCAGGGCTTTATCAAGCCATGGATTGAACACATCAGAAAAGAACGTGAAATGAAGGGGCGCCTTATATCTGAAATCTTAGGGCATGCTCAGTCTGATATGGTTGGCAGGCTTCGTAGTGATGATGGTACACCTGATGAATCTGCTATCAAAAGGTTGTTTGAGGAAGTTGATAGCAATGGGGATAATTTCGTTACGCAATCTGAGTTAAAAAAACTAGTCACCAACATCCAGTTTGATAAGGCTGCAGATGAGGACGAGGCGGTTACAAAGATCATTCAAGAACTTGACCTTAATAGTGACAATGTAATTAGTGAGGAGGAGTTTGTTGATGGGTTTACAAAATGGCTACACTCATTTTCCAGAGAAGCTCCTCACTCAAAAACTCTGCCTCATGGAGAAATCCATCAAACATGGGAAGATGTTGAAGAGGTGGTGGAAGAGAATCATAACAAAGGAACATATGCATGGTTCAAGGCTATACTAAATGTGGTGCTGGGAATTACTATGTTATCTGTTCTTGCAGAGCCCCTTATAGCAAGTGTCCAGAAATTCTCAGTAGATGCAGGAATTCCATCTTTTTTTGTCTCATTTATTTTGGTCCCACTGGCTACAAATTTTAGAGAAGCAACATCAGCAATCAAAGAAGCTAGCCACAAGAAGAGAAGTAACACTTCTCAGACAATCTACGAGATTTATGGAGCAGTGTTCATGAACAACATTCTAGGCTTTTCGGCAATTTCAATTCTGATATATGTACGGGAAATCACTTGGGAATTCTCAGCTGAAGTGCTGGTTGTGGCAATTGTTTGTGCTATAATGGGGCTTACTGCAGGTTTTCGCCTCACTTTCCCTCTATGGACATCCTGCGGCGCATACCTTTTGTATTTGCTATCCTTAGTTCTGGTTTATGTTATCAACAATGTTTTTAATTATGTTTAG	2130	0.4023	MISISKTACFTSIIFAAVLLEVEGRNLQNKASAASISDGFADGVQPRTSHLLLKGIESSQEECKQMYGFLPCSTSIFGHLFLILVYEFLLFHGESYLAAGGEQIFKILGPGIFGASAFDILGALPESLILLVTGLSSNKESAQEYASTGVGLLAGSSIMLLTVVWGTCVITGSQKLINDSKHRHSPHSYSSTATLKELLTGFGITMDKETRDMARIMVLSVIPLIIMQIPNLFQFSSVLRAVTLMIALSITVLWFFLYFIYQIFKPQIEKTRLEYIKHHDLILRIFQHVEKQTLQRILTEDGTPNVAAINGLYNEISQRGDRDLLASEVKELLLKNKLTETNVTEEQVEDMVRVFDRNGDQIITKEEFVTGLTQWIEETRHALDKQYIPRKSLKNIYQGFIKPWIEHIRKEREMKGRLISEILGHAQSDMVGRLRSDDGTPDESAIKRLFEEVDSNGDNFVTQSELKKLVTNIQFDKAADEDEAVTKIIQELDLNSDNVISEEEFVDGFTKWLHSFSREAPHSKTLPHGEIHQTWEDVEEVVEENHNKGTYAWFKAILNVVLGITMLSVLAEPLIASVQKFSVDAGIPSFFVSFILVPLATNFREATSAIKEASHKKRSNTSQTIYEIYGAVFMNNILGFSAISILIYVREITWEFSAEVLVVAIVCAIMGLTAGFRLTFPLWTSCGAYLLYLLSLVLVYVINNVFNYV	709

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi14g0993	709	Pfam	EF-hand domain pair	444	507	IPR002048	GO:0005509
	Glsi14g0993	709	PANTHER	VACUOLAR CALCIUM ION TRANSPORTER	66	701	IPR004713	GO:0006812\|GO:0008324\|GO:0016020
	Glsi14g0993	709	Gene3D	-	304	384	-	-
	Glsi14g0993	709	Gene3D	-	385	524	-	-
	Glsi14g0993	709	ProSiteProfiles	EF-hand calcium-binding domain profile.	480	515	IPR002048	GO:0005509
	Glsi14g0993	709	ProSitePatterns	EF-hand calcium-binding domain.	493	505	IPR018247	-
	Glsi14g0993	709	ProSiteProfiles	EF-hand calcium-binding domain profile.	343	378	IPR002048	GO:0005509
	Glsi14g0993	709	ProSitePatterns	EF-hand calcium-binding domain.	356	368	IPR018247	-
	Glsi14g0993	709	SUPERFAMILY	EF-hand	326	513	IPR011992	-
	Glsi14g0993	709	Pfam	Sodium/calcium exchanger protein	559	700	IPR004837	GO:0016020\|GO:0055085
	Glsi14g0993	709	SMART	efh_1	347	375	IPR002048	GO:0005509
	Glsi14g0993	709	SMART	efh_1	445	473	IPR002048	GO:0005509
	Glsi14g0993	709	SMART	efh_1	484	512	IPR002048	GO:0005509
	Glsi14g0993	709	CDD	EFh	446	510	IPR002048	GO:0005509
	Glsi14g0993	709	ProSitePatterns	EF-hand calcium-binding domain.	454	466	IPR018247	-
	Glsi14g0993	709	ProSiteProfiles	EF-hand calcium-binding domain profile.	441	476	IPR002048	GO:0005509
	Glsi14g0993	709	Pfam	EF-hand domain pair	339	372	IPR002048	GO:0005509

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi14g0993	Glsi-ChrGlsi14	11216252	11222025	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi14g0993	396	708	EF-hand Containing Proteins	AT1G53210	41.692	4.79e-63	219

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Glsi14g0993	14	11216252	11222025	Glsi14g0993	14	11216252	11222025	ECH