Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g0992 ATGAAGAGCCATAGCTTAGCTGACGTATGTCCTATACCCCAACCCACACCTTTTGGTTCTGATACTGATTCTGTGTCGATCTCCATGGCTCACGCTACCCGTTTCACCGCTATCCTCTTTGTTTCAATCCTAATCATCTGCTGTCACACCCATGGTCGCTTCGTCACCCCCCTTTCATCATCTTCGTCATCCTCCTCTGATCTGATCTCAGATGGGGTCCTTGATTCCCGGGATCTACATGAGAACAACCCGCTCCTGCTTCCCCAGTCGTTTGGATTCCTGTCGGAGTCTACCTGCGAGCAGACATATGGGTTCTTGCCCTGTACCACCACTGTGGTCGGCAACTTGTTTCTCATCATCGTCTATGGCTTCCTCATGTTCAAGGCAGCTACTTACTTGTCCGGTGGGAGTGAACTCTTGCTTGAGATCTTAGGCCCTGGTATCGTTGGCGGGTTGTTTCTTCCCACGCTCGGTGCGCTGCCAGATGCCATGCTCATCCTCGTATCTGGGCTTTCTGGTAGTAAAGAAACTGCTCAAAGTCAGGTCTTTGTTGGAATGGGCTTGCTAGCTGGGTCAACAGTTCTGCTTCTGACTATAATATGGGGAACATGCGTAATTGTTGGCAAGTGCGACATTGAGGATTCAATTGCAATAGATTCACAAGATACAAGGGGGTTCAGCTTAACTGGTTCTGGTGTTAGTACAGATATTTGGACAAGTTATGCGGCAAGAATTATGGTCATATCTGTCCTTCCATTTGTGATTGTTCAATTACCACAACTTCTTAATTCAACTTCAGGAAGGCACTTGACTGTTTTGATTGCGCTTATTGTGTCTTTGTCTTTATTGATTGCTTATTGCCTTTACCAGATTTTCCAACCTTGGATACAGAGGAGAAAACTTGCTTATGTGAAACACAAGCATGTTATTTTAGGACTTTTGAAACACTTAAAGCAGCGGGCATTGGGAAGGCTGCTGAGAGATGATGGTGAAGCTGATGAAGAAATTATAAAAAAGTTGTTTGCTACAATTGATGAGAATAATGATAGTCACCTTTCTCATGGTGAATTGAGAGCACTAATTGTTGGAATTCAATTCGAGGAACTTGACCTGGATCATGATGATGCTGTGAATAAAATTATGCAAGATTTTGATACCTCTCGCGATTCAAAGGTTGATGTAGGTGAATTTTTAGCTGGTGTCCGTAGATGGCTTCAAAGGGCTAAGCATTCTCAGGCTGCTTCTGGTGATGCTGGTCCACACACAATGAAGTTTTTAAGTGATTTTCACCTAGAAACAAAAAGGGAACACGATCTATTGGATGTGGGGGGTCAAAGTGATGAAGTTGTTGAGGGTGTTGCTAATAGCAGATGGACTGTCATCAAAGCAGTGTTGCTGCTGTTGCTCGGAACTGTTATTGCAGCTGTGTCCGCTGATCCTCTGGTTGATGCAGTTGATAACTTTTCTGATGCCACGAGCATTCCTGCTTTCTTCATTTCCTTCATTGCATTGCCTTTGGCTACAAATTCAAGTGAAGCAGTGTCAGCAATTATTTTTGCTAGTCGTGATAAGAGGAAAACTGCCTCATTAACTTTTTCTGAGCTATATGGGGCAGTGACAATGAACAATGTGCTGTGCCTTTCGGTGTTCTTGGCTCTTGTTTATGCAAGGGGATTGACATGGGATTTCTCTTCAGAAGTGTTGGTTATTCTCCTAGTTTGCCTTGTCATGGGTCTCTTTGCCAGTTTCCGCACCACCTTCCCTCTCTGGACATCTATAGTAGCTATCCTACTTTACCCGATATCCTTGGCATTAGTTTATGTTCTTGATTATGTATTTGGCTGGTCATAG 1851 0.4398 MKSHSLADVCPIPQPTPFGSDTDSVSISMAHATRFTAILFVSILIICCHTHGRFVTPLSSSSSSSSDLISDGVLDSRDLHENNPLLLPQSFGFLSESTCEQTYGFLPCTTTVVGNLFLIIVYGFLMFKAATYLSGGSELLLEILGPGIVGGLFLPTLGALPDAMLILVSGLSGSKETAQSQVFVGMGLLAGSTVLLLTIIWGTCVIVGKCDIEDSIAIDSQDTRGFSLTGSGVSTDIWTSYAARIMVISVLPFVIVQLPQLLNSTSGRHLTVLIALIVSLSLLIAYCLYQIFQPWIQRRKLAYVKHKHVILGLLKHLKQRALGRLLRDDGEADEEIIKKLFATIDENNDSHLSHGELRALIVGIQFEELDLDHDDAVNKIMQDFDTSRDSKVDVGEFLAGVRRWLQRAKHSQAASGDAGPHTMKFLSDFHLETKREHDLLDVGGQSDEVVEGVANSRWTVIKAVLLLLLGTVIAAVSADPLVDAVDNFSDATSIPAFFISFIALPLATNSSEAVSAIIFASRDKRKTASLTFSELYGAVTMNNVLCLSVFLALVYARGLTWDFSSEVLVILLVCLVMGLFASFRTTFPLWTSIVAILLYPISLALVYVLDYVFGWS 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g0992 616 Gene3D - 449 609 IPR044880 -
Glsi14g0992 616 Pfam EF-hand domain pair 337 400 IPR002048 GO:0005509
Glsi14g0992 616 CDD EFh 337 402 IPR002048 GO:0005509
Glsi14g0992 616 Pfam Sodium/calcium exchanger protein 117 293 IPR004837 GO:0016020|GO:0055085
Glsi14g0992 616 Pfam Sodium/calcium exchanger protein 463 607 IPR004837 GO:0016020|GO:0055085
Glsi14g0992 616 ProSiteProfiles EF-hand calcium-binding domain profile. 332 367 IPR002048 GO:0005509
Glsi14g0992 616 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 100 608 IPR004713 GO:0006812|GO:0008324|GO:0016020
Glsi14g0992 616 FunFam Sodium/calcium exchanger family protein / calcium-binding EF hand family protein 309 431 - -
Glsi14g0992 616 SUPERFAMILY EF-hand 331 405 IPR011992 -
Glsi14g0992 616 SMART efh_1 336 364 IPR002048 GO:0005509
Glsi14g0992 616 SMART efh_1 376 404 IPR002048 GO:0005509
Glsi14g0992 616 Gene3D - 283 416 - -
Glsi14g0992 616 ProSiteProfiles EF-hand calcium-binding domain profile. 372 407 IPR002048 GO:0005509
Glsi14g0992 616 FunFam Sodium/calcium exchanger NCL2 452 609 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g0992 Glsi-ChrGlsi14 11202941 11210363 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g0992 51 616 EF-hand Containing Proteins AT1G53210 67.895 0.0 763
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi14g0992 14 11202941 11210363 Glsi14g0992 14 11202941 11210363 ECH