Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g0912 ATGCTCGTGGACCAACGACTCTGGTTTGATAGACAGTTATGTTTTAGAGTAAAACCTGCGATATCCCTTCCTTTCATAGGTTGCTTCTTCCATTCTTGTCTGAAGGTTTCTTTTTTTCTTCTTTTTTTCTCTGGGTTTTCTTCCTCGGATCATAGGCGTGGATCTAATACCAATTTATCTGTTGGAATTGTAATGATGATCGTCATTGATCTTGGTCATACCACTTTGATCTTGGTCCTTGTGAACATTTCAGCTGAAACTAGTGAAATTCCAGATCTGTATGTGTATCTTGAACGGAGTTTGATATGTAATGCTCAGTTCCTCCCTATGCCTGAATCTGGAAATTTACTTGACATGGCTACATATACCCCAAAGAATATCCTCATCACTGGGGCAGCTGGATTTATTGCATCTCATGTTGCCAACCGGCTTATCCGGAGCTACTCTGACTACAAAATTGTTGTGCTGGACAAACTTGATTACTGTTCTAATTTGAAGAACCTCCTTCCTTCAAAATCATCTCCCAACTTCAAGTTTGTGAAGGGGGATATTGGAAGTGCAGACCTTGTCAACTACCTTCTCATCACCGAGTCGATTGACACAATAATGCACTTTGCTGCTCAGACACATGTTGACAACTCATTTGGTAATAGCTTTGAGTTCACCAAGAACAACATATATGGTACTCATGTCCTGTTAGAAGCCTGCAAGGTCACTGGCCAGATCAGGAGGTTCATTCATGTGAGCACAGATGAGGTCTATGGGGAGACAGATCAGGATGCTGTTGTTGGAAACCATGAGGCATCGCAACTTCTTCCCACAAATCCATACTCTGCAACAAAAGCTGGAGCAGAAATGCTTGTAATGGCATATGGTAGATCATATGGGTTACCTGTAATAACAACACGTGGAAATAATGTTTATGGGCCCAATCAGTTTCCTGAGAAGTTAATTCCAAAGTTCATCCTCTTGGCTATGCAAGGAAAGCCTCTTCCAATTCATGGGGATGGTTCTAATGTGAGGAGTTATTTATATTGTGAAGATGTTGCGGAGGCTTTTGAAGTTATCCTTCACAAGGGAGAGGTTGGCCATGTTTACAATATTGGGACTACAAGAGAAAGGAGAGTTATTGATGTAGCCAAAGATATATGCAGACTTTTCTCAATGGACCCAGATACTAGTATAAAATTTGTAGAGAACAGACCATTTAATGACCAGAGATACTTTCTTGATGATCAAAAGCTGAAGGACTTGGGTTGGTCTGAGAGGACCGCTTGGGAAGAGGGGCTGAAGAAAACCATTGAGTGGTATACCAAGAATCCTGATTGGTGGGGTGATGTCAGTGGGGCATTGCTTCCTCATCCAAAAATGCTGATGATGCCTGGTGGGATGGAGCGACTTTTTGAAGGCTCTGAAGAAGAAAATCCTGCATCCTATCTCTCAACTAATACTCGAATGTTGGTTCCCTCATCTAAAAACACTGGCGCTCAGCAGCAGAAACCTCCTTATAAGTTCTTGATCTATGGTAGGACAGGGTGGATTGGGGGTCTGCTGGGGAAACTTTGTGAAAAACAAGGGATTCCATTTGAATATGGAAAGGGGCGCCTAGAAGATCGCACATCACTCTTGGCAGATATCCGGAGTGTGAAGCCTACCCATGTTTTTAATGCTGCAGGAGTGACTGGCAGACCCAATGTTGACTGGTGTGAATCTCATAAAACGGAAACCATTCGCACCAATGTTGCTGGTACTTTAACATTGGCTGATGTCTGCAGAGAGCAGGGGCTGTTGATGATAAATTATGCTACTGGGTGTATATTTGAGTATGATGCAGCACATCCAGAGGGCTCTGGCATTGGTTTCAAGGAGGAAGACAAACCCAATTTCATTGGTTCTTACTATTCCAAAACTAAAGCTATGGTTGAAGAGCTTTTGAAAGAATATGACAATGTGTGCACCCTTAGGGTTCGCATGCCAATTTCATCTGATCTGAATAACCCACGCAACTTCATTACTAAGATTTCTCGTTATAACAAAGTGGTTAACATTCCAAACAGCATGACTATCTTGGACGAACTTTTGCCTATTTCAATTGAATTGGCAAAGCGAAACAAGAGTGGCATCTGGAACTTCACAAATCCTGGGGCTGTGAGCCATAATGAGATCCTCGAGATGTATAGGGATTACATCGACCCCGACTTCAAGTGGGTTAACTTCACACTTGAAGAGCAAGCCAAAGTGATTATTGCTCCTCGAAGCAACAATGAGATGGATGCATCCAAGTTGAAGAAAGAGTTCCCAGATTTGCTTCCCATCAAGGAATCGCTGATTAAGTATGTCTTCGAACCAAACAAGAAAAGCAATAAAAAATAA 2373 0.4214 MLVDQRLWFDRQLCFRVKPAISLPFIGCFFHSCLKVSFFLLFFSGFSSSDHRRGSNTNLSVGIVMMIVIDLGHTTLILVLVNISAETSEIPDLYVYLERSLICNAQFLPMPESGNLLDMATYTPKNILITGAAGFIASHVANRLIRSYSDYKIVVLDKLDYCSNLKNLLPSKSSPNFKFVKGDIGSADLVNYLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDQDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQFPEKLIPKFILLAMQGKPLPIHGDGSNVRSYLYCEDVAEAFEVILHKGEVGHVYNIGTTRERRVIDVAKDICRLFSMDPDTSIKFVENRPFNDQRYFLDDQKLKDLGWSERTAWEEGLKKTIEWYTKNPDWWGDVSGALLPHPKMLMMPGGMERLFEGSEEENPASYLSTNTRMLVPSSKNTGAQQQKPPYKFLIYGRTGWIGGLLGKLCEKQGIPFEYGKGRLEDRTSLLADIRSVKPTHVFNAAGVTGRPNVDWCESHKTETIRTNVAGTLTLADVCREQGLLMINYATGCIFEYDAAHPEGSGIGFKEEDKPNFIGSYYSKTKAMVEELLKEYDNVCTLRVRMPISSDLNNPRNFITKISRYNKVVNIPNSMTILDELLPISIELAKRNKSGIWNFTNPGAVSHNEILEMYRDYIDPDFKWVNFTLEEQAKVIIAPRSNNEMDASKLKKEFPDLLPIKESLIKYVFEPNKKSNKK 790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g0912 790 FunFam UDP-glucose 4,6-dehydratase 127 327 - -
Glsi14g0912 790 Pfam GDP-mannose 4,6 dehydratase 128 433 IPR016040 -
Glsi14g0912 790 PANTHER DTDP-D-GLUCOSE 4,6-DEHYDRATASE-RELATED 121 455 - -
Glsi14g0912 790 CDD dTDP_GD_SDR_e 125 442 IPR005888 GO:0008460|GO:0009225
Glsi14g0912 790 Gene3D - 493 790 - -
Glsi14g0912 790 CDD dTDP_HR_like_SDR_e 504 776 - -
Glsi14g0912 790 Gene3D - 318 440 - -
Glsi14g0912 790 Pfam RmlD substrate binding domain 504 674 IPR029903 -
Glsi14g0912 790 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 501 779 IPR036291 -
Glsi14g0912 790 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 117 450 IPR036291 -
Glsi14g0912 790 Gene3D - 127 431 - -
Glsi14g0912 790 FunFam Bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase 494 790 - -
Glsi14g0912 790 NCBIfam dTDP-glucose 4,6-dehydratase 126 446 IPR005888 GO:0008460|GO:0009225
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g0912 Glsi-ChrGlsi14 10575741 10580370 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g0912 126 437 Miscellaneous Gene Families AT4G00110 27.246 6.11e-21 94.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi14g0912 14 10575741 10580370 Glsi14g0912 14 10575741 10580370 ECH