Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1337 ATGGATCCCAACCCAGGAAGTTTCCCTATTCTCTCCTACGTGATGAGTCGACTCCCTTCTCTGGTGCATAGACCCACCACCCCCGACGAATTTGACATCGAACAACCTCAGCCTCACCCTTCGCCTTCGCTCCATCCTTCCTCTTCTTCTTCCGGTTTGCAGCAGCCCGAAATCGTGGGGCAAAGGCCTCACCTCACTGACCCGAAACTCTTAGCCGCCATGACGCGCGCCATCTCCGACGTCGCCCAGACCCGATCCGTACTCAAACTCATCGGCGAGCGACCCGACCATGAAGCCGTCGATAATGCAAAGGCCAAGCTTGCCGACGTAGAAGCTCTTTTGTCCAGGCAACTGGAAGAGATAGTACTCTCACCGAGGCCCGCTGATATCGACATCCTTCAGTGGCGGGCTCACCAGGCCGAAAAAGAGAAGGAGTGCAGGGAATTAGCTGAGAAAGAGAAGCAGGCATACAAGTCAATGATACAGTTGGATGAGATGCACGGTGCTTATGAGAAATTGCTGAAGGATGCTGAGAAGAGGCTGGAAGAAATTTACGAGTCGGCTGGGGAGAGAGCAGAATATGCCGAAGAAGACAAGCCTGTTCGGGAGGAGGTCAATGAAGAGGTTGTAGGGATACTGCAGGAGGCATATGGAATAGGGATGGAGCGAGTGGATCTTTCGGGGCGGCGGTTGAGGTTGCTGCCTGAGGCCTTTGGGCGAATTCCTGGGTTAGTCGTGCTCGATCTTTCAAACAATCAGCTGGCGGAGATTCCTGATTCAATAGCTGGATTGCAAAGTCTCGAGGAGCTTAATGTCTCTTCAAATCTTTTGGAGTCACTTCCAGATTCAATTGGCTTGTTACAAAAGTTGAAATTTCTAAATGTCTCTGGGAACAAGCTGAATACCCTTCCTGATTCCATCTGTCACTGCAGGTCATTGGTGGAGCTGGATGCAAGCTTCAACAGTCTGATATATTTGCCAACAAACATTGGACATGAATTAGTAAACTTACAGAAGCTCTCCATTCAATTGAACAAGATTCGATCTTTTCCTTCATCCATCTGTGAAATGAGATCCTTGCGGTATCTGGATGCCCATTTTAATGAGCTACATGGGCTTCCTATTGCAATTGGGAGATTAACTAATCTTGAAGTTCTCAACCTAAGCAGTAATTTTAGTGACCTTAGAGAACTTCCTGAGACATTTGGTGATCTGACTAACCTCAGGGAATTGGATCTCAGCAACAATCAGATTCATGCACTTCCTGATACATTTGGTCGCCTTGACAATTTGGTCAAGCTCAACTTGGAGCAGAACCCTCTGGAATTGCCACCAATGGAAATTGTAAATGAAGGGACTGAAGCAGTAAAGACTTTTATGGCAAAGAGGTGGCTTGATATATTGGTTGAGGAAGAAAGGAAAAGCATGAATGAAATGCAAGAACAAGCACAGGCTGGATGGTTAACACGAAGCTCCTCCAGGTTGAAGAATTATGTATGGGAAGTTTCTGGAAGTGTCACTGGTTATCTAGGATCTGCCGTAGGATCTCCTAAAACGCCCAAAGATCCTTATCTTGATCAGCAGCTGTGA 1590 0.4742 MDPNPGSFPILSYVMSRLPSLVHRPTTPDEFDIEQPQPHPSPSLHPSSSSSGLQQPEIVGQRPHLTDPKLLAAMTRAISDVAQTRSVLKLIGERPDHEAVDNAKAKLADVEALLSRQLEEIVLSPRPADIDILQWRAHQAEKEKECRELAEKEKQAYKSMIQLDEMHGAYEKLLKDAEKRLEEIYESAGERAEYAEEDKPVREEVNEEVVGILQEAYGIGMERVDLSGRRLRLLPEAFGRIPGLVVLDLSNNQLAEIPDSIAGLQSLEELNVSSNLLESLPDSIGLLQKLKFLNVSGNKLNTLPDSICHCRSLVELDASFNSLIYLPTNIGHELVNLQKLSIQLNKIRSFPSSICEMRSLRYLDAHFNELHGLPIAIGRLTNLEVLNLSSNFSDLRELPETFGDLTNLRELDLSNNQIHALPDTFGRLDNLVKLNLEQNPLELPPMEIVNEGTEAVKTFMAKRWLDILVEEERKSMNEMQEQAQAGWLTRSSSRLKNYVWEVSGSVTGYLGSAVGSPKTPKDPYLDQQL 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1337 529 ProSiteProfiles Leucine-rich repeat profile. 289 310 IPR001611 GO:0005515
Glsi13g1337 529 Gene3D Ribonuclease Inhibitor 338 456 IPR032675 -
Glsi13g1337 529 SUPERFAMILY L domain-like 221 446 - -
Glsi13g1337 529 MobiDBLite consensus disorder prediction 23 55 - -
Glsi13g1337 529 PANTHER LEUCINE-RICH REPEAT-CONTAINING 290 450 - -
Glsi13g1337 529 ProSiteProfiles Leucine-rich repeat profile. 407 428 IPR001611 GO:0005515
Glsi13g1337 529 Coils Coil 100 120 - -
Glsi13g1337 529 Gene3D Ribonuclease Inhibitor 155 337 IPR032675 -
Glsi13g1337 529 FunFam Plant intracellular Ras-group-related LRR protein 9 142 325 - -
Glsi13g1337 529 FunFam Plant intracellular Ras-group-related LRR protein 2 329 502 - -
Glsi13g1337 529 Coils Coil 167 187 - -
Glsi13g1337 529 SMART LRR_typ_2 311 333 IPR003591 -
Glsi13g1337 529 SMART LRR_typ_2 264 286 IPR003591 -
Glsi13g1337 529 SMART LRR_typ_2 241 263 IPR003591 -
Glsi13g1337 529 SMART LRR_typ_2 334 357 IPR003591 -
Glsi13g1337 529 SMART LRR_typ_2 287 310 IPR003591 -
Glsi13g1337 529 SMART LRR_typ_2 405 428 IPR003591 -
Glsi13g1337 529 SMART LRR_typ_2 380 404 IPR003591 -
Glsi13g1337 529 Pfam Leucine rich repeat 382 441 IPR001611 GO:0005515
Glsi13g1337 529 Pfam Leucine rich repeat 233 277 IPR001611 GO:0005515
Glsi13g1337 529 ProSiteProfiles Leucine-rich repeat profile. 266 287 IPR001611 GO:0005515
Glsi13g1337 529 PRINTS Leucine-rich repeat signature 405 418 - -
Glsi13g1337 529 PRINTS Leucine-rich repeat signature 244 257 - -
Glsi13g1337 529 ProSiteProfiles Leucine-rich repeat profile. 243 265 IPR001611 GO:0005515
Glsi13g1337 529 SMART LRR_bac_2 241 260 - -
Glsi13g1337 529 SMART LRR_bac_2 405 424 - -
Glsi13g1337 529 SMART LRR_bac_2 264 283 - -
Glsi13g1337 529 SMART LRR_bac_2 287 306 - -
Glsi13g1337 529 SMART LRR_bac_2 310 329 - -
Glsi13g1337 529 SMART LRR_bac_2 380 401 - -
Glsi13g1337 529 SMART LRR_bac_2 334 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1337 Glsi-ChrGlsi13 30706699 30710680 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1337 223 465 Receptor kinase-like Gene Family AT5G07180 30.469 5.39e-12 66.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi13g1337 13 30706699 30710680 Glsi13g1337 13 30706699 30710680 ECH