Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1328 ATGGGGGAGAGTACAGTGGATGGTGCTTCGCTACCTTCGGGTCCAGACGCAAAAAAGAGGAGGGTCACCTATTTCTACGAACCCACCATCGGCGATTACTACTACGGCCAAGGCCACCCTATGAAACCCCATCGGATTCGCATGGCCCACAATCTCATCGTCCATTACTCCCTCCATCGCCGCATGGAAATCAACCGTCCCTTCCCCGCCGCACCCGATGACATCCGCCGTTTCCACTCCGACGAATACGTCGACTTTCTCTCCACTGTCTCGCCGGAGACCCTCGGTGAGCACACCTTCTCTCGTCAGCTCAAGCGCTTCAATGTTGGCGAGGATTGTCCCGTCTTTGACGGCTTATTCAATTTTTGTCAGGCCTCTGCTGGTGGTTCCATTGGTGCTGCTGTCAAGTTGAACCGTGCGGATGCTGATATTGCGATCAATTGGGCCGGTGGTTTGCACCATGCTAAGAAGTCTGAGGCTTCTGGGTTTTGTTACGTCAATGATATTGTCCTCGGCATTCTTGAGCTTCTCAAGGTTCACAGGCGTGTTCTGTATGTCGACATTGATGTCCACCATGGAGATGGTGTTGAGGAGGCTTTTTACACCACTGATAGAGTGATGACAGTCTCTTTTCATAAATTTGGGGATTTTTTTCCAGGCACTGGGCACATTAAAGACGTTGGGGTGGGCCCAGGGAAGAATTATGCTTTAAATGTCCCATTAAATGATGGGATGGATGATGAAAATTTCCGTGGCCTGTTTCGCCCTATCATTCAGAAAGTCATGGAGGTTTATCAACCTGATGCAGTTGTTCTTCAATGTGGTGCCGATTCCTTGTCTGGTGACAGGTTGGGTTGCTTCAATTTGTCTGTGAAGGGTCATGCAGATTGCCTTCGTTTCCTTAGGTCTTTCAATGTTCCTCTAATGGTCTTGGGTGGGGGAGGATATACAATTCGAAACGTTGCTCGTTGCTGGTGTTATGAGACGGCGGTGGCAGTAGGAGTGGAACCTGATAATAAGTTGCCTTACAATGAATATTTTGAGTATTTTGGCCCAGATTACACTCTTCATGTTGATCCATGCAACATGGAGAACCTAAACTCACCCAAGGATATGGAAAAAATAAGGACTTTACTACTGGAACAACTTTCCAGGCTTCCTCATGCACCTAGTGTACCTTTTCAGACAACACCCTCTACCATTGAAGTTCCAGAAGAGGCAGAAGAGGACATGGATCGAAGACCAAAGCCTCGCATATGGAGTGGTGAAGATTATGATTCTGATCACGACGAAGATGAGAAGGCTAGTTCAAAGTGCTCAAATTTAACTGCTCATATGGGGGATGTTCCAGATGAGATGGAAGAGGAGAAGCCGGAAGTGCATCCTTCATCTCAATAA 1398 0.4778 MGESTVDGASLPSGPDAKKRRVTYFYEPTIGDYYYGQGHPMKPHRIRMAHNLIVHYSLHRRMEINRPFPAAPDDIRRFHSDEYVDFLSTVSPETLGEHTFSRQLKRFNVGEDCPVFDGLFNFCQASAGGSIGAAVKLNRADADIAINWAGGLHHAKKSEASGFCYVNDIVLGILELLKVHRRVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHIKDVGVGPGKNYALNVPLNDGMDDENFRGLFRPIIQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSFNVPLMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNEYFEYFGPDYTLHVDPCNMENLNSPKDMEKIRTLLLEQLSRLPHAPSVPFQTTPSTIEVPEEAEEDMDRRPKPRIWSGEDYDSDHDEDEKASSKCSNLTAHMGDVPDEMEEEKPEVHPSSQ 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1328 465 MobiDBLite consensus disorder prediction 407 438 - -
Glsi13g1328 465 MobiDBLite consensus disorder prediction 448 465 - -
Glsi13g1328 465 PIRSF HDAC_I_euk 5 463 IPR003084 GO:0004407|GO:0016575
Glsi13g1328 465 PRINTS Histone deacetylase signature 169 185 IPR003084 GO:0004407|GO:0016575
Glsi13g1328 465 PRINTS Histone deacetylase signature 128 148 IPR003084 GO:0004407|GO:0016575
Glsi13g1328 465 PRINTS Histone deacetylase signature 41 58 IPR003084 GO:0004407|GO:0016575
Glsi13g1328 465 PRINTS Histone deacetylase signature 74 92 IPR003084 GO:0004407|GO:0016575
Glsi13g1328 465 PRINTS Histone deacetylase signature 107 124 IPR003084 GO:0004407|GO:0016575
Glsi13g1328 465 PRINTS Histone deacetylase signature 228 241 IPR003084 GO:0004407|GO:0016575
Glsi13g1328 465 PRINTS Histone deacetylase signature 245 263 IPR003084 GO:0004407|GO:0016575
Glsi13g1328 465 Gene3D Histone deacetylase domain 18 393 IPR037138 -
Glsi13g1328 465 MobiDBLite consensus disorder prediction 389 465 - -
Glsi13g1328 465 Pfam Histone deacetylase domain 39 330 IPR023801 -
Glsi13g1328 465 PRINTS Histone deacetylase superfamily signature 182 197 IPR000286 -
Glsi13g1328 465 PRINTS Histone deacetylase superfamily signature 267 277 IPR000286 -
Glsi13g1328 465 PRINTS Histone deacetylase superfamily signature 150 173 IPR000286 -
Glsi13g1328 465 CDD HDAC_classI 25 332 - -
Glsi13g1328 465 FunFam Histone deacetylase 18 397 - -
Glsi13g1328 465 PANTHER HISTONE DEACETYLASE 2-RELATED 9 343 - -
Glsi13g1328 465 SUPERFAMILY Arginase/deacetylase 20 385 IPR023696 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1328 Glsi-ChrGlsi13 30655922 30659138 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi13g1328 13 30655922 30659138 Glsi13g1328 13 30655922 30659138 ECH